Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00819 ATGGATCCAAAAGTGTGTGATGAATCAGTGAAAGAAGCTTCGGATTTCAAGCCCGAGAACATTCTACAACCAGTTGATGAATCGATTGTGTGTCCCACTCCACAGAAGAAGACTGAACTATTACCCAACAAATTCAAGGACCCAATTGCCCAGCTTCCGGAAAATTACAGGGTCATTGCTGATTTGTTTAGGCATATGAGTTGTTCGCTTAGATTGCTGCATCTGCGTAAAAAGTCTCCGACTTTTCTGAATATTTGCAACAAGGTTGAAGTTCTTGCCAAAAGAAACTTCTCACATGCTGATCTAGCGCAGATGAAGTATATACTCCCTGAAGGTATAGAAATTGAAAAGGTGGTTGTTATTGATAAGAAGAGCTTGTGTATGAAGCCGGATTTGAAGATTACATTGGTTTTTGAAGTTGTAAAAGATCACTCGGAACAGTCTGCTGATATAGCTCTTAGACAATATTTTAATTCCAGATTGATTAATTTCTTTAATCTGCACCCTCAGGTTACTAAGATTCCAGAGTCAAGACTACCAGAGCCCTTTAGCCAAGAAACTTGTAATTTGACTTTCAATATCGGGCGTGCAGATATTGCTGCAGAACCGTCATCAACTTCCAATGAAATTGTAGAGCCGCTGAAAAACTTACATTTGACAAATTTGGCAGCAGAACTTTCATCAACTTCCAATGAAATTATAGAGCCGCTAAAAAACTTACATTTGAATGCCGCTGACCAGGCTAAGCAAGTTCATAGCTTTTCATCATCTGAAAACTCTTTGTCATCCGATGAATCTGACTCCCTATATGACCAAGAAAGTGAAAGCTCATGGCAGAAAGAATGTACACCAATGTCTGATTGTGAGCGTAATCTTAATGCAGAAAGTGGTAAGCAGAAGGAATTATTGTCAATGTCTTTTCAGGCAAATGTTGTTAATACACCATCAGAACATAAGACATCATCTCCGCGTTCTGTTAGCCGCTGTATTTCTGAAAGCCCTGATTTGAAAATTGTCTCTTGTGCTGATAGTTTGTTGACACAAACACCTGCACTGTCAGCACCTGAGAGATTGGTGCTCGGTTCCGATGTTAAGCCTCAAAAAATGTCTGCTCAAAAGTCTATGTCATGCTTTAAGCCTGCAAAAAGAGCGCTTGACTTTACACAAACAGAAGGCAATTGTGATTTGGATGATAGAGTAGACATGTTAGAATCTAGCAAAACTATGCATGAATTTGATTGCAGCTCTAAACTTAGCAAAGGACGTCCTGAGGATTGCAAATCATTTGATTCTGTTTCCCTACCTCGGGAGGTTCAAGAGAATCTTTGTTATTCTTTTGAGAAAATCAGCCAGAACCAAGTTAGTTCGGATGCATCAGATGACAATCCTCCATCATTAGTGGAACTGGTTAATGTGATTGACTCTATATTTACCTCTGTCAAAACAAATGCAATCACAAAAGAGGAGCTCCTGCAAAAGATAATGCCGAACTGTTTAGATTTTGTTGATACTAGAGAAGCTGAAGAACAGATTGAGATTTTAGAAAAGATTGTGCCAGATTGGATTTGCAAGAAGTCGCTTGCTTCTGTAGATGGAGTCACAATGTACTGCGTTAATAATGCGATAGATTTGGACTCAGTTCGATCAAGACTTCTCAGCAATGTAACCAAAGGAGACGAATGA 1683 0.3922 MDPKVCDESVKEASDFKPENILQPVDESIVCPTPQKKTELLPNKFKDPIAQLPENYRVIADLFRHMSCSLRLLHLRKKSPTFLNICNKVEVLAKRNFSHADLAQMKYILPEGIEIEKVVVIDKKSLCMKPDLKITLVFEVVKDHSEQSADIALRQYFNSRLINFFNLHPQVTKIPESRLPEPFSQETCNLTFNIGRADIAAEPSSTSNEIVEPLKNLHLTNLAAELSSTSNEIIEPLKNLHLNAADQAKQVHSFSSSENSLSSDESDSLYDQESESSWQKECTPMSDCERNLNAESGKQKELLSMSFQANVVNTPSEHKTSSPRSVSRCISESPDLKIVSCADSLLTQTPALSAPERLVLGSDVKPQKMSAQKSMSCFKPAKRALDFTQTEGNCDLDDRVDMLESSKTMHEFDCSSKLSKGRPEDCKSFDSVSLPREVQENLCYSFEKISQNQVSSDASDDNPPSLVELVNVIDSIFTSVKTNAITKEELLQKIMPNCLDFVDTREAEEQIEILEKIVPDWICKKSLASVDGVTMYCVNNAIDLDSVRSRLLSNVTKGDE 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00819 560 CDD Cdt1_m 34 182 IPR014939 -
Vivi6g00819 560 PANTHER DNA REPLICATION FACTOR CDT1 42 552 IPR045173 GO:0003677|GO:0030174|GO:0071163
Vivi6g00819 560 Gene3D - 463 558 IPR038090 -
Vivi6g00819 560 SUPERFAMILY "Winged helix" DNA-binding domain 50 183 IPR036390 -
Vivi6g00819 560 SMART CDT1_2 52 181 IPR014939 -
Vivi6g00819 560 MobiDBLite consensus disorder prediction 251 286 - -
Vivi6g00819 560 Pfam DNA replication factor Cdt1 C-terminal domain 466 523 IPR032054 -
Vivi6g00819 560 Pfam DNA replication factor CDT1 like 52 118 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00819 Vivi-Chr6 24599105 24603042 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00819 337 551 Core DNA Replication Machinery Family AT3G54710 28.139 2.22e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00819 K10727 - gmx:102670055 504.212