Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00802 ATGAAGAATATTAAGGAATCAGGTACAAGGAAACCAATAACTAGTCTTGATGCACATATGTATCTGAAAGAAATAAAGGATGCATTTAAAGATGAGAAGTACAAGTACAAAGTATTTTTAAGGGCCATGAAAGATTTCAATTTAAGAAGAATTGATATTGTAGGTGTGATGGAAAGAGTGGAGAAATTGTTTCAAAGGCATACAGAATTGTTATTAAAATTTAATAACTTTTTGCCAGATGGATTTGAAATCAAACCTTCACCAAAGAAGCCAAATTTTCCAGTAATGAATAAAGAAGATGCTGACAAATATTTGGACAAGGTGAAGACTCGGTTTCAACATCAACCATATGTATATGATTCATTTGTAGACATAATGATTATGTATAAAAACAAAGATAAGAGTCTCGAAGAGATTTATGAAATGATTTTTGTCCAGGTTGCTTCACTTTTTAAAGATCATCATGATCTTGTTGATGGATTTACAAATTTTCTTCTATAA 501 0.2994 MKNIKESGTRKPITSLDAHMYLKEIKDAFKDEKYKYKVFLRAMKDFNLRRIDIVGVMERVEKLFQRHTELLLKFNNFLPDGFEIKPSPKKPNFPVMNKEDADKYLDKVKTRFQHQPYVYDSFVDIMIMYKNKDKSLEEIYEMIFVQVASLFKDHHDLVDGFTNFLL 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00802 166 Pfam Paired amphipathic helix repeat 35 78 IPR003822 GO:0006355
Vivi6g00802 166 Pfam Paired amphipathic helix repeat 118 165 IPR003822 GO:0006355
Vivi6g00802 166 SUPERFAMILY PAH2 domain 97 165 IPR036600 GO:0006355
Vivi6g00802 166 Gene3D Paired amphipathic helix 17 79 IPR036600 GO:0006355
Vivi6g00802 166 ProSiteProfiles PAH domain profile. 93 166 IPR003822 GO:0006355
Vivi6g00802 166 ProSiteProfiles PAH domain profile. 11 81 IPR003822 GO:0006355
Vivi6g00802 166 Gene3D Paired amphipathic helix 95 166 IPR036600 GO:0006355
Vivi6g00802 166 FunFam Paired amphipathic helix protein Sin3 17 79 - -
Vivi6g00802 166 SUPERFAMILY PAH2 domain 10 80 IPR036600 GO:0006355
Vivi6g00802 166 PANTHER SIN3B-RELATED 16 165 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00802 Vivi-Chr6 24327608 24330612 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00802 4 113 WRKY Transcription Factor Family AT4G12020 34.545 1.63e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi6g00802 PAH 7.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00802 K11644 - vvo:131649408 219.55