Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00789 ATGGCTACAAAGTTTACTCTTCTTTTCCTTCTCCTAACTCTACTCTCCATTACAACATCAACACCAACAAGTTTCATCAAATCCTCATGTAGCACAACACAATACCCAACACTTTGTGTTGAATCTCTCTCTATCTATGCCTCAACAATCCAACAAGACCCTCACCAATTAGTCCAAACAGCCTTATCCCTTACTCTCAACAAAACTCAATCCACAAAAGGCTTTGTTACAATGTGCAAAAGCTTCAAAAATCTCAAACCAAGAGAATATGCTGCTCTTCATGATTGTGCTCAAGAAATAAGTGATAGTGTTGATAGGCTTAGCCGTTCTTTGAAAGAACTTCAACTTTGCAAGATCAACGGTCAAGATTTCAATTGGCATATAAGCAATGTTGAGACATGGGTTAGCTCAGCTTTGACTGATGAAAGCACTTGTGGTGATGGATTTGGTGGAAAAACACTTGATGGAAAAATCAAAGCCTCTATTAGATCTAGAATGGTTAATGTTGCTCAAGTTACTAGTAATGCTCTTTCACTCATTAATCAATATGCTGCTAATCACTTGGAGGATATTAAATAG 579 0.3731 MATKFTLLFLLLTLLSITTSTPTSFIKSSCSTTQYPTLCVESLSIYASTIQQDPHQLVQTALSLTLNKTQSTKGFVTMCKSFKNLKPREYAALHDCAQEISDSVDRLSRSLKELQLCKINGQDFNWHISNVETWVSSALTDESTCGDGFGGKTLDGKIKASIRSRMVNVAQVTSNALSLINQYAANHLEDIK 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00789 192 NCBIfam pectinesterase inhibitor domain 5 183 IPR006501 GO:0004857
Vivi6g00789 192 Gene3D Invertase/pectin methylesterase inhibitor family protein 21 183 IPR035513 -
Vivi6g00789 192 FunFam Pectin methylesterase inhibitor 1 21 183 - -
Vivi6g00789 192 SMART PMEI_2 21 179 IPR006501 GO:0004857
Vivi6g00789 192 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 24 183 IPR035513 -
Vivi6g00789 192 PANTHER PECTINESTERASE INHIBITOR-LIKE 7 179 - -
Vivi6g00789 192 Pfam Plant invertase/pectin methylesterase inhibitor 24 179 IPR006501 GO:0004857
Vivi6g00789 192 CDD PMEI-like_3 28 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00789 Vivi-Chr6 24085804 24086520 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00789 19 180 Carbohydrate Esterase AT3G14310 29.697 1.08e-20 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00789 - - lja:Lj0g3v0070759.1 294.278