Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00778 ATGCCCGCCGGCATGGACATGTCACTCGACGACATCATCAACACCACCACCGCTCGCCGCCGCTTCACCGGAACTCACGGACCAAACCGCAACACCGGCGTTCGTAACACGATCAGAATCACGCCGTACTCTATTCCTCCGTCTCAGATTGCTAGAGAATCGTTGCGAAGAAGAAGCAGCGTCGATGTTCCGGAAACGATTCTCGATCGTGACGCTGTTCAAACTCGACCTATCACTAAACTCTATTTGTCTAACTTGGATGATAGGGTTTCCAACGAAGATATTCATCTGTTATTCTCGGAAGAAGGTGCGTTGGAAAGGTATTCCATTCATTATGATCAGTTTGGGAGATCAAAAGGAACAGCAGAAGTTGTCTTTACAAAGCAGTCTGATGCTTTATCAGCCCTCAAAAGGTACAACAATATGAAGCTTGATGGAAAGACATTGCAAATTGAGCTTGTCGGAATTGGAACAAGTTCTATTACTCCTGCCGATACCCCTCTCAGTCAAAGCAGCATACTGGGAAGACCCGATGATCGCGTCTTTGCAAAAAGCAGCATACTGGGAAGACCAAATGATCGTGTCTTTGCAAGGGAAGAAAGGAAGATTGGAGGTAGCAGGTACCTTAACAGCTTTACACATGGTGGCTATCTTCCAATGGGCCATGGAGAAGAGAAGTGGATAAGGAAAGTGGCTTTTAGAGCTATCGGTCGCGACTTTGGGAGTTATAACCGCCGCCCCGTAGAAGCAAAACGCAATTTCCAAAAGTTGTCTGTGAAAGATCTTGATGAAGATCTGGATAAGTATCACCTAGAGGCTATGCGGATTAGCAAAGAAAATGGAAAGGGAAATCGGGATTGA 861 0.4623 MPAGMDMSLDDIINTTTARRRFTGTHGPNRNTGVRNTIRITPYSIPPSQIARESLRRRSSVDVPETILDRDAVQTRPITKLYLSNLDDRVSNEDIHLLFSEEGALERYSIHYDQFGRSKGTAEVVFTKQSDALSALKRYNNMKLDGKTLQIELVGIGTSSITPADTPLSQSSILGRPDDRVFAKSSILGRPNDRVFAREERKIGGSRYLNSFTHGGYLPMGHGEEKWIRKVAFRAIGRDFGSYNRRPVEAKRNFQKLSVKDLDEDLDKYHLEAMRISKENGKGNRD 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00778 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 156 IPR000504 GO:0003723
Vivi6g00778 286 SUPERFAMILY RNA-binding domain, RBD 43 153 IPR035979 GO:0003676
Vivi6g00778 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 149 IPR000504 GO:0003723
Vivi6g00778 286 Gene3D - 71 154 IPR012677 -
Vivi6g00778 286 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 274 - -
Vivi6g00778 286 Coils Coil 259 279 - -
Vivi6g00778 286 SMART rrm1_1 80 152 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00778 Vivi-Chr6 23822418 23825492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00778 81 154 Eukaryotic Initiation Factors Gene Family AT2G23350 36.486 7.30e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00778 K12881 - gmx:100785926 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00778 6 23822418 23825492 Vivi6g00778 6 23822418 23825492 ECH