Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00763 ATGAAGAGAGAAAGAGAGGTTGATAGCATAACCATGGCAAATTGTTTGATGTTACTTTCTAGAGGAAGTGAACAATTTGAAGCTACTTATTCATCTACCATCACTTCAAATGATCGTGTGTTTGAATGCAAAACATGTAATAGACAATTCTCATCCTTTCAAGCACTTGGTGGCCATAGGGCAAGTCATAAGAAACCAAGGTTGATGATGGGAGATAATATTGATGGTCAATTGCTACATACACCCCCTAAACCTAAATCTCATGAGTGTTCTATTTGTGGATTGGAGTTTGCAATAGGACAAGCTTTAGGTGGTCATATGAGGAGACATAGAGCTTCAAATATGAATAACTCTAATAATACTATGAGTTCTAGTAGTGGTGGTGGGGGTGGGAATAGTAGTTTTGATTCTTCTCAAAAGATGAAAGGTAGAAAGAGAGTTTTGCTTTTGGATTTGGATTTGAATTTGACTCCTTTTGAGAATGATTTGGAGTTTTTGAAGATTGGAAAAACCACTGCAAATTTGATTGATTATTTGCATTGA 543 0.3591 MKREREVDSITMANCLMLLSRGSEQFEATYSSTITSNDRVFECKTCNRQFSSFQALGGHRASHKKPRLMMGDNIDGQLLHTPPKPKSHECSICGLEFAIGQALGGHMRRHRASNMNNSNNTMSSSSGGGGGNSSFDSSQKMKGRKRVLLLDLDLNLTPFENDLEFLKIGKTTANLIDYLH 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00763 180 Gene3D Classic Zinc Finger 20 113 - -
Vivi6g00763 180 PANTHER ZINC FINGER PROTEIN ZAT5 5 162 - -
Vivi6g00763 180 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Vivi6g00763 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Vivi6g00763 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Vivi6g00763 180 Pfam C2H2-type zinc finger 88 112 - -
Vivi6g00763 180 Pfam C2H2-type zinc finger 40 66 - -
Vivi6g00763 180 SUPERFAMILY beta-beta-alpha zinc fingers 39 110 IPR036236 -
Vivi6g00763 180 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Vivi6g00763 180 SMART c2h2final6 88 110 IPR013087 -
Vivi6g00763 180 SMART c2h2final6 41 63 IPR013087 -
Vivi6g00763 180 MobiDBLite consensus disorder prediction 111 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00763 Vivi-Chr6 23526033 23526830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00763 1 177 C2H2 Transcription Factor Family AT2G37430 44.865 5.90e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g00763 zf-C2H2_6 9.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00763 - - gmx:100500371 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00763 6 23526033 23526830 Vivi6g00763 6 23526033 23526830 ECH