Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00757 ATGGCTCCATCAAAGGTGGACAAACCAAAGAAGGCTGATCCCAAAGCTCAGGCCTTGAAGACAGCCAAGGCAGTGAAGTCAGGTGGCCAAGGTATTAAGAAGAAATCAAAGAAGATCAGAACAACTGTCACATTTCACCGGCCAAAGACACTGTCGAAGGAAAGGAACCCAAAGTATCCTCGCATTAGTGCAACACCAAGAAACAAGTTGGACTACTATCAAATACTTAAATTTCCTCTAACTACCGAGTCTGCAATGAAGAAAATTGAAGATAACAATACACTTGTTTTTATCGTTGACCTCCGTGCTGACAAAAAGAAAATTAAAGATGCTGTGAAGAAAATGTATGACATTCAGGCCAAGAAAGTGAACACTTTGATCAGGCCTGATGGTACGAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGCATTAGATGTTGCCAACAAAATCGGTATCATTTAA 468 0.4038 MAPSKVDKPKKADPKAQALKTAKAVKSGGQGIKKKSKKIRTTVTFHRPKTLSKERNPKYPRISATPRNKLDYYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00757 155 FunFam 60S ribosomal protein L23a 34 155 - -
Vivi6g00757 155 ProSitePatterns Ribosomal protein L23 signature. 133 148 IPR001014 GO:0019843
Vivi6g00757 155 PANTHER 60S RIBOSOMAL PROTEIN L23A 7 155 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vivi6g00757 155 MobiDBLite consensus disorder prediction 1 17 - -
Vivi6g00757 155 NCBIfam 50S ribosomal protein L23 79 155 IPR019985 GO:0003735|GO:0005840|GO:0006412
Vivi6g00757 155 Gene3D - 36 155 IPR012677 -
Vivi6g00757 155 Hamap 50S ribosomal protein L23 [rplW]. 75 155 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vivi6g00757 155 MobiDBLite consensus disorder prediction 1 39 - -
Vivi6g00757 155 Pfam Ribosomal protein L23, N-terminal domain 15 64 IPR005633 -
Vivi6g00757 155 Pfam Ribosomal protein L23 75 137 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vivi6g00757 155 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 72 148 IPR012678 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00757 Vivi-Chr6 23349899 23352004 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00757 1 155 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 87.097 3.92e-68 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00757 K02893 - gmx:100777933 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00757 6 23349899 23352004 Vivi6g00757 6 23349899 23352004 ECH