Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00754 ATGGCGTTGAATAGACTTCTTAACTTTGATTTGGAAGATGATTCAAGATGGAAGATTGATCCAAGCGATGAGGCTCTTATCAATATTTACCTAAGGAAGAAGGTTCATAGGCAACCTCTTCCACTTAATAACATTGTTGAATATGAAGTGTTTCAAACTGAACCTTGGATGCTTCCAGATAGTAGGAGTTCATTCAGAGATAGGAAGTATTACTTCTTTGATATAAGGAACCATAGATTTGAAAATATGGATACAAGACCAGTTGGAATTGGTGAATGGAGGATTTTGGAGAAGAACACTGAAATTTCTATGCCAACCAATATGTTCATTGGGAGAAAGAACACGCTTGAATTCTGGAAGATTGTGGGTGATGAACCAGTGAAAACTGAATGGGCAATGGATGAACTTCGCATCAGTCCAACAATTCATCCATCCAAGGTTTCATCTTTAGCTGTTTATCGGATCTTTAAGACAACTTTACCAACTGTAATTGATCTCACAATAGAGGAAGAAAGTTTATCTCTCCCGCCGTCACCATGA 540 0.3778 MALNRLLNFDLEDDSRWKIDPSDEALINIYLRKKVHRQPLPLNNIVEYEVFQTEPWMLPDSRSSFRDRKYYFFDIRNHRFENMDTRPVGIGEWRILEKNTEISMPTNMFIGRKNTLEFWKIVGDEPVKTEWAMDELRISPTIHPSKVSSLAVYRIFKTTLPTVIDLTIEEESLSLPPSP 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00754 179 SUPERFAMILY NAC domain 20 158 IPR036093 GO:0003677|GO:0006355
Vivi6g00754 179 Gene3D NAC domain 22 160 IPR036093 GO:0003677|GO:0006355
Vivi6g00754 179 ProSiteProfiles NAC domain profile. 13 158 IPR003441 GO:0003677|GO:0006355
Vivi6g00754 179 PANTHER NAC TRANSCRIPTION FACTOR 56 19 158 - -
Vivi6g00754 179 Pfam No apical meristem (NAM) protein 18 137 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00754 Vivi-Chr6 23220596 23221333 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00754 17 149 NAC Transcription Factor Family AT3G04070 31.655 2.53e-19 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi6g00754 NAM 4.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00754 - - vvo:131614574 286.96