Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00750 ATGGTACTCACCGGCAGAGAAAGTTTGATTCGATTAATCGGAAAACGACGCCGTTTTCTTCCCAATCGTCTTTCCATTCTCTCCGATCCCATTCCAAACCCTAACCACCAACCGGAACAACAACAACCTTCCACACCCGGTGACAACCTCCAAAACGACGCCGTACAGTGTCCCATCTGTTCCCTCACACTTCCCTCCGATAACCACCGCATCAACACTCATCTCGATTCGTGTCTCTCTCAACCTAAACTAAGCGGAACAAACCGAAAACGAAAACTCACACAGCAAACTCTACTTCAGTTAAACTTCACTCGCCCTGATCCACACGTGCCGGATCACACGCTCCAAAAATGTCTACAGTTCACTGAAAGTCCCATTGCTGATAAGGATTCAGTAATTATTACAACAGAATCTTCGCCTTTGTCATCCGAATTCACCCCTATTGATACTAACCATCATGATATTGTTGATAATGTTGATGATAAATGTGATGTTTTTGAAGTAAAGCTTGAGACTATGATTGTTGGTAGGAGATATGCTGATCAAGAGGAAATATGTGCTGGTGATAAGGTCTCTCTTTTGAGAGATTCGCAAAATGTTAAGGATCCAAATGCCATCAAGGTTGTTTCTGTAGATTCCGGGTGTTCTAAATTTCTAGGTTATCTCCCTCGCGAGTTGGCACAGTATCTATCTCCTCTAATTGACAACTATGACATTGTATTTCAGGGACATGTCACTTCTGATCCTAAACATTCTCGTGACGCAGTTCCAATTCAGATTATGTGCCACAGAACACCAGATGGTGAAAGCAAGTCCAAAGACGAGACTTTTAAATGTTTATGGAAAAATGCTCAGCACGCTGTTGAATCTGCTATCAAGAATCCTTCATCTGTAAAGTACCAGCTGAATTTTTGTCTTATTATACAAGAGGCCTTAAAAAATAATATTCACCTTTTAACAGAAGATGAAAAAACCTATATTGAGTCGTTCACTTCACTCTCAAATGACAGTCAGAGGCTTTTTATTCGGATATACACTAGAAAAGGACCGTGGTTTCGCATGTCTAGTATATCGTATCCTGAAATATTGGATATTCAAAAGGCAGTCAAGGAACTTGCGGAGAAAGAATACATTTGCACTGTTGAAGATGGAAACCAACTATGTGAAAGTGACATGAATGATATATTAGATGTGCTCACTGTCTCTGAGCTGCGTGAAATTTTGTGTTTCTTGCTTAAAAAGAGTTGCGGTCACGGAATGAAGAAGCAAGATCTCATTTCATCTATTCTTTCTACATGTGCAGGATTATGGCCACACCTATCAAAAATGATTTTAGATAGAACTGGTTTCTGCATCAAGATATCTTCAAAAGCTGAGTCTCTTATTTGGCGTATCGAGAGACTTTTCTTCTTAAATGGAGAACAGGATCTCTCGTCCTTTCTACTAGTTGATATAGGAAAAATCAAATATCCAACTTATACCTGCACAATATTGGAACCAATATTCTCGAATCGCATGGATCTTCTTGCATTCGAAGAGGCCATTGAAGTGGCACAAGTTATGGATGAAGCCCTTGATGCAAACAAAACTGATATGGTATTGAGGTGCATAAAGATTGCTGAATCCCGTGTATCCGCTGTGTTGCCCATCCAGTACTCGACTTCTAAAACAGTATCTACATTCCATCACTTATTTACAGCATCATGGGTATATTCCAAAGTGGTTACGTTAGGGATCTCCTTTCTTGAGCAGGAGCGCAGGTACAGTGATGCAATCGACTTGCTTAAGTTGCTTCAAAATGTTTTCACTTGTGATGTAAAAAGAGGATATTGGGCACTGAGATTATCTGTTGACCTGGAGCATCTGGGTTACATAGACGAGAGCCTTCAAGTGGCTGAAAACGCGTTGCTGGATCAATGGGTACGAGCTGGTTCAAGAATGGCATTGCAAAGACGTGTTCTTCGCTTAGGAAAACCACCAAGACGGTGGAAAGTTCCTAGTTTTTCTAAATCTGTACTGCGAAAGATCCCTGAGGGACTCATGTGA 2046 0.4086 MVLTGRESLIRLIGKRRRFLPNRLSILSDPIPNPNHQPEQQQPSTPGDNLQNDAVQCPICSLTLPSDNHRINTHLDSCLSQPKLSGTNRKRKLTQQTLLQLNFTRPDPHVPDHTLQKCLQFTESPIADKDSVIITTESSPLSSEFTPIDTNHHDIVDNVDDKCDVFEVKLETMIVGRRYADQEEICAGDKVSLLRDSQNVKDPNAIKVVSVDSGCSKFLGYLPRELAQYLSPLIDNYDIVFQGHVTSDPKHSRDAVPIQIMCHRTPDGESKSKDETFKCLWKNAQHAVESAIKNPSSVKYQLNFCLIIQEALKNNIHLLTEDEKTYIESFTSLSNDSQRLFIRIYTRKGPWFRMSSISYPEILDIQKAVKELAEKEYICTVEDGNQLCESDMNDILDVLTVSELREILCFLLKKSCGHGMKKQDLISSILSTCAGLWPHLSKMILDRTGFCIKISSKAESLIWRIERLFFLNGEQDLSSFLLVDIGKIKYPTYTCTILEPIFSNRMDLLAFEEAIEVAQVMDEALDANKTDMVLRCIKIAESRVSAVLPIQYSTSKTVSTFHHLFTASWVYSKVVTLGISFLEQERRYSDAIDLLKLLQNVFTCDVKRGYWALRLSVDLEHLGYIDESLQVAENALLDQWVRAGSRMALQRRVLRLGKPPRRWKVPSFSKSVLRKIPEGLM 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00750 681 Gene3D - 159 278 - -
Vivi6g00750 681 MobiDBLite consensus disorder prediction 28 52 - -
Vivi6g00750 681 Pfam HIRAN domain 170 251 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vivi6g00750 681 SMART HIRAN_2 169 264 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vivi6g00750 681 SMART c2hc_5 54 79 IPR006642 GO:0003677|GO:0006281
Vivi6g00750 681 PANTHER FANCONI-ASSOCIATED NUCLEASE 1 5 678 IPR033315 GO:0004518|GO:0036297
Vivi6g00750 681 MobiDBLite consensus disorder prediction 25 52 - -
Vivi6g00750 681 Gene3D Classic Zinc Finger 51 82 - -
Vivi6g00750 681 ProSiteProfiles Zinc finger UBZ4-type profile. 54 83 IPR006642 GO:0003677|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00750 Vivi-Chr6 23123124 23128557 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00750 120 260 RAD5 or RAD16-like Gene Family AT5G05130 30.070 2.85e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00750 K15363 - gmx:100793881 892.878