Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00748 ATGCTCTGCTACATTGGAGGAAGTGAGTCTAGTGAACATTTTTATGTCATAAATGAGGCCTGCTCAATGTTTGCACATACCAACCCCTTGCATTTGGATGTATTCCAGAGTGTCGTACGCTTTGAGGCAGAAGTGGTTGCAATGACAGCGGCACTTCTCGGTAGTAAAGAAAAGGCATCTGGAGGACAAATATGTGGAAACATGACATCAGGAGGAACTGAAAGCATATTATTAGCTGTTAAATCATCTCGCGACTATATGAAGTCCAAAAAAGGAATTACAAAACCCGAAATGATAATTCCCGAGTCTGGTCACTCAGCATATGACAAAGCTGCACAGTATTTTAACATAAAACTATGGCGTGTTCCAGTTAACAAAGATTTTCAAGCAGACGTGAAAGCAATTCGGCGTTATATCAACAAAAATACCATTTTGATTGTTGGATCTTCTCCCGGGTTTCCTCATGGGATAATAGACCCCATTGAAGAACTTGGTCAACTAGCATCAAGCTTTGGCATTTGTTTCCATGTGGACCTTTGCCTTGGTGGCTTTGTATTACCTTTCGCTCGTGAGCTTGGGTACGATATTCCACCTTATGATTTTTCTGTTAAAGGGGTTACTTCAATATCAGTGGATGTGCATAAATATGGGTTAGCTCCCAAAGGAACAAGTATCGTTCTATATAGGAACCATGAAATCAGAAAGAATCAATTTGTTGCAGTTACCGAGTGGTCTGGTGGGTTGTATGTATCTCCAACCATAGCTGGAAGTAGACCTGGAAGCCTTATTGCTGGTGCATGGGCAGCAATGATGTCTCTAGGGAAAGAAGGTTACTTGGAACATACCAAAGCAGTTATGGAAGGATCAAAAAGACTACAAAAAGGCGTAGAGGAGATTCCTGAGTTGTTTATCATTGGACGACCAGATATGACAATCATAGCTTTTGGATCCAAAGTTCTGGATATATTTGAGGTCAACGATATCATGTCATCCAAAGGTTGGCATTTGAATGCATTGCAGAGACCCAACAGCATCCATATCTGCGTGACACTGCAACATGTACCAATTGTTGATGACTTTATAAGGGATTTAAAGGAATCTGTGGAAACTGTGAAACAAAATCCGGGTCCAATAAGTGGAGGACTGGCACCTATATATGGTGCGGCCGGGAAGATGCCCGATAGAGGAACGGTTCAGGAATTGCTGGTGGATTATATGGATGGTACATGCTAG 1233 0.4177 MLCYIGGSESSEHFYVINEACSMFAHTNPLHLDVFQSVVRFEAEVVAMTAALLGSKEKASGGQICGNMTSGGTESILLAVKSSRDYMKSKKGITKPEMIIPESGHSAYDKAAQYFNIKLWRVPVNKDFQADVKAIRRYINKNTILIVGSSPGFPHGIIDPIEELGQLASSFGICFHVDLCLGGFVLPFARELGYDIPPYDFSVKGVTSISVDVHKYGLAPKGTSIVLYRNHEIRKNQFVAVTEWSGGLYVSPTIAGSRPGSLIAGAWAAMMSLGKEGYLEHTKAVMEGSKRLQKGVEEIPELFIIGRPDMTIIAFGSKVLDIFEVNDIMSSKGWHLNALQRPNSIHICVTLQHVPIVDDFIRDLKESVETVKQNPGPISGGLAPIYGAAGKMPDRGTVQELLVDYMDGTC 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00748 410 Gene3D - 10 274 IPR015421 GO:0003824
Vivi6g00748 410 SUPERFAMILY PLP-dependent transferases 13 374 IPR015424 -
Vivi6g00748 410 Gene3D Aspartate Aminotransferase, domain 1 275 373 IPR015422 GO:0003824
Vivi6g00748 410 PANTHER - 10 410 - -
Vivi6g00748 410 FunFam Sphingosine-1-phosphate lyase 1 263 373 - -
Vivi6g00748 410 Pfam Pyridoxal-dependent decarboxylase conserved domain 38 316 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vivi6g00748 410 FunFam Sphingosine-1-phosphate lyase 1 370 409 - -
Vivi6g00748 410 Gene3D - 374 407 - -
Vivi6g00748 410 FunFam sphingosine-1-phosphate lyase 1 10 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00748 Vivi-Chr6 23078651 23084544 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00748 26 370 Calmodulin-binding Proteins AT3G17760 26.230 2.19e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00748 K01634 - gmx:100794743 763.066