Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00747 ATGGATTCTTCTGTGTTGACTTATCACTTTAATCACTTTCGAACCACCGCGAATTCGTTTCTATCTCAATACGAACCTCTTGCACTGATTCTCGTTCCGATTTTCACTCTCTTTGTCGCGAACGTAGTTCGTTCGTTTTTCGAAGTTTTTCGTGATAAAGGAGTCAAAGCTACTCTCCTAGGGTTCTTCATGAACTTCATCAAATTGATTCCTGGTGTGAAGAGTTATATAGATGCTGAAAAACAGAAGGTTGTGGATAAGTTGCAGTCGGATGGTAAATCTAAAAGAGATGGTTGGACGACAGAGTTGCCAAGCACGGGGTTGGGGACATCTGTGCTTGAGAAAATGAAAGAAGAGAAAAAAAATGATGCAGTTTGGCAAGGCAAATGCTCTGGTACAGTCTACATTGGAGGAAGTGAGTCTAGTGAACATTTTTATGTCATAAATGAGGCCTGCTCAATGTTTGCACATACCAACCCCTTGCATTTGGATGTATTCCAGAGTGTCGTACGCTTTGAGGCAGAAGTGGTTGCAATGACAGCGGCACTTCTCGGTAGTAAAGAAAAGGCATCTGGAGGACAAATATGTGGAAACATGACATCAGGAGGAACTGAAAGCATATTATTAGCTGTTAAATCATCTCGCGACTATATGAAGTCCAAAAAAGGAATTACAAAACCCGAAATGATAATTCCCGAGTCTGGTCACTCAGCATATGACAAAGCTGCACAGTATTTTAACATAAAACTATGGCGTGTTCCAGTTAACAAAGATTTTCAAGCAGACGTGAAAGCAATTCGGCGTTATATCAACAAAAATACCATTTTGATTGTTGGATCTTCTCCCGGGTTTCCTCATGGGATAATAGACCCCATTGAAGAACTTGGTCAACTAGCATCAAGCTTTGGCATTTGTTTCCATGTGGACCTTTGCCTTGGTGGCTTTGTATTACCTTTCGCTCGTGAGCTTGGGTACGATATTCCACCTTATGATTTTTCTGTTAAAGGGGTTACTTCAATATCAGTGGATGTGCATAAATATGGGTTAGCTCCCAAAGGAACAAGTATCGTTCTATATAGGAACCATGAAATCAGAAAGAATCAATTTGTTGCAGTTACCGAGTGGTCTGGTGGGTTGTATGTATCTCCAACCATAGCTGGAAGTAGACCTGGAAGCCTTATTGCTGGTGCATGGGCAGCAATGATGTCTCTAGGGAAAGAAGGTTACTTGGAACATACCAAAGCAGTTATGGAAGGATCAAAAAGACTACAAAAAGGCGTAGAGGAGATTCCTGAGTTGTTTATCATTGGACGACCAGATATGACAATCATAGCTTTTGGATCCAAAGTTCTGGATATATTTGAGGTCAACGATATCATGTCATCCAAAGGTTGGCATTTGAATGCATTGCAGAGACCCAACAGCATCCATATCTGCGTGACACTGCAACATGTACCAATTGTTGATGACTTTATAAGGGATTTAAAGGAATCTGTGGAAACTGTGAAACAAAATCCGGGTCCAATAAGTGGAGGACTGGCACCTATATATGGTGCGGCCGGGAAGATGCCCGATAGAGGAACGGTTCAGGAATTGCTGGTGGATTATATGGATGGTACATGCTAG 1626 0.4157 MDSSVLTYHFNHFRTTANSFLSQYEPLALILVPIFTLFVANVVRSFFEVFRDKGVKATLLGFFMNFIKLIPGVKSYIDAEKQKVVDKLQSDGKSKRDGWTTELPSTGLGTSVLEKMKEEKKNDAVWQGKCSGTVYIGGSESSEHFYVINEACSMFAHTNPLHLDVFQSVVRFEAEVVAMTAALLGSKEKASGGQICGNMTSGGTESILLAVKSSRDYMKSKKGITKPEMIIPESGHSAYDKAAQYFNIKLWRVPVNKDFQADVKAIRRYINKNTILIVGSSPGFPHGIIDPIEELGQLASSFGICFHVDLCLGGFVLPFARELGYDIPPYDFSVKGVTSISVDVHKYGLAPKGTSIVLYRNHEIRKNQFVAVTEWSGGLYVSPTIAGSRPGSLIAGAWAAMMSLGKEGYLEHTKAVMEGSKRLQKGVEEIPELFIIGRPDMTIIAFGSKVLDIFEVNDIMSSKGWHLNALQRPNSIHICVTLQHVPIVDDFIRDLKESVETVKQNPGPISGGLAPIYGAAGKMPDRGTVQELLVDYMDGTC 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00747 541 PANTHER - 38 541 - -
Vivi6g00747 541 FunFam sphingosine-1-phosphate lyase 1 141 405 - -
Vivi6g00747 541 FunFam Sphingosine-1-phosphate lyase 1 501 540 - -
Vivi6g00747 541 SUPERFAMILY PLP-dependent transferases 79 505 IPR015424 -
Vivi6g00747 541 Gene3D - 101 538 - -
Vivi6g00747 541 Gene3D - 138 405 IPR015421 GO:0003824
Vivi6g00747 541 FunFam Sphingosine-1-phosphate lyase 1 394 504 - -
Vivi6g00747 541 Gene3D Aspartate Aminotransferase, domain 1 110 504 IPR015422 GO:0003824
Vivi6g00747 541 Pfam Pyridoxal-dependent decarboxylase conserved domain 169 447 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00747 Vivi-Chr6 23078651 23086071 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00747 157 501 Calmodulin-binding Proteins AT3G17760 26.230 9.59e-24 102