Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00742 ATGGCTGGGAAGGTCGCGAAGGCAGCTTATGATGCGAAGATGGGAAAGCTTCTTCGAGAATACACACAAGTTTTGGTGGTTTCAGCCGACAATGTTGGATCAAACCAGCTTCAGGGTATAAGAAGGACACTGCACGAAGATTCTGTGGTAGTGATGGGAAAGAACTCATTGATGAAGCGCTCTATTATCCAAGAAGCAGAGAAAACTGGCAACAACAACGCTTTTCTCAATCTCGTTCCACTCCTTGTGGGGAATGTTGCTTTGATCTTTACCAAAGGTGACTTGAGGGATGTTAGTGAACGGATTGCCAAGCTCAAGGTTGTTAATCCTATTCTCATGTGCCCGAAGTATATGTCATATGACTCGTACAAAACGTGTACGTATATGCAAACCGGACAATTGCCGTTGGGTCTCACGTGTTGTAACCAGCAACCTTCTCAAGCTTCCGAGCCGTTTCTTGTAAGCTCAAAATTCTCGCCACCTCAACACTGTTACTTGTCGAGATCGAGACAGCTCTTGGCGACAAGTATATGGTCTCCTTTTCTTCTTTTGGCTGGTAATTTGTGA 567 0.4497 MAGKVAKAAYDAKMGKLLREYTQVLVVSADNVGSNQLQGIRRTLHEDSVVVMGKNSLMKRSIIQEAEKTGNNNAFLNLVPLLVGNVALIFTKGDLRDVSERIAKLKVVNPILMCPKYMSYDSYKTCTYMQTGQLPLGLTCCNQQPSQASEPFLVSSKFSPPQHCYLSRSRQLLATSIWSPFLLLAGNL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00742 188 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 5 140 - -
Vivi6g00742 188 Gene3D - 3 129 IPR043141 -
Vivi6g00742 188 Pfam Ribosomal protein L10 6 104 IPR001790 -
Vivi6g00742 188 SUPERFAMILY Ribosomal protein L10-like 7 108 IPR043141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00742 Vivi-Chr6 22806767 22808984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00742 1 110 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 62.281 1.10e-38 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00742 K02941 - jre:108980032 143.665