Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00727 ATGGTCACCATCACCAACTTCATACTAATGGTGATGGTTTTCAATTTATGCATTTCTTTAGTACAATCAGTCACAGGTCATTTCTCCTTCAAAGAAGAATTTCCAAAGTGGGTGGAACGGCAAGACAAGATGCTGCTCACAACAGATGATGCTCATTTTGATATGATCGTTGCTGGCGATGGTTCGGGAAAGTACGTTAAGGTAATGGATGCGGTATCAGCTGCGCCAAAGAATAGCAAAAAGCGTTTTGTTATAAAAGTTAAGAAAGGCATTTACATGGAAAACGTGATTATCGGTCCAGATAAACCTAAGCTCATGATTATAGGAGAGGGAATGGATGTTACGGTTATTTCTGGTAACCTGAGTCACCGCGGAAACAACTTGACTTCATACGACACAGCTACCTTTGGTGTTGATGGCGATGGTTTCATAGCAAGAGATATCACTTTTAAGAACACTGCCGGACCTATGAATGAGCAAGCTGTTGCATTAAGGTCAAGTTCGGAGAAATCCATCTTTTATAGGTGTAGAATTGATGGTTATCAAGACAGTCTCTACGCTCACTCTCTAAGACAATTTTACAAAGAGTGCATAATAAGTGGGACGGTTGATTTTATCTTTGGGTATGCGGCTGCCGTTTTTCAAAATTGTGACATACTAGTGAAGAAAGGATTACCTGGACAATATAATACTATTGCCGCTCAAGGAGGGGAGTTTAAACCTAACATCCCATTTGGTTTTGTATTACAATTCTGCAACATTTATGCTGATTCCGACCTTCTCCCGGTTGTTCACTCTACTAAAACCTATCTCGGAAGGCCATGGCATGCACGCTCGAAAACAGTGTTCATGCAGTCTAACATAAGTAGTGTGGTGAGTCCAGAAGGGTGGTCAGAATGGGCTGGGAAACCTGAATTTTCTGACACCTTATATTATGCTGAATTCAAAAATTATGGACAGGGAGCTGTGCTGAAAAATCGTATAAGATGGAGAGGTTACCATATTCTTAGGGATTTTAAGGAGGCTAATAAATTTACCGTAGCCCAATTAATTTCTGGAAATACATGGATACCTTCAGATGTACCATTTACTCCTGGGTTTGGATTAGGGAATTAA 1116 0.4032 MVTITNFILMVMVFNLCISLVQSVTGHFSFKEEFPKWVERQDKMLLTTDDAHFDMIVAGDGSGKYVKVMDAVSAAPKNSKKRFVIKVKKGIYMENVIIGPDKPKLMIIGEGMDVTVISGNLSHRGNNLTSYDTATFGVDGDGFIARDITFKNTAGPMNEQAVALRSSSEKSIFYRCRIDGYQDSLYAHSLRQFYKECIISGTVDFIFGYAAAVFQNCDILVKKGLPGQYNTIAAQGGEFKPNIPFGFVLQFCNIYADSDLLPVVHSTKTYLGRPWHARSKTVFMQSNISSVVSPEGWSEWAGKPEFSDTLYYAEFKNYGQGAVLKNRIRWRGYHILRDFKEANKFTVAQLISGNTWIPSDVPFTPGFGLGN 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00727 371 SUPERFAMILY Pectin lyase-like 53 359 IPR011050 -
Vivi6g00727 371 Gene3D - 52 368 IPR012334 -
Vivi6g00727 371 FunFam Pectinesterase 48 367 - -
Vivi6g00727 371 Pfam Pectinesterase 54 354 IPR000070 GO:0030599|GO:0042545
Vivi6g00727 371 ProSitePatterns Pectinesterase signature 2. 199 208 IPR033131 -
Vivi6g00727 371 PANTHER PECTINESTERASE 16 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00727 Vivi-Chr6 22392638 22394313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00727 33 367 Carbohydrate Esterase AT4G33220 54.006 3.25e-129 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00727 K01051 - gmx:100798620 412.149