Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00706 ATGGCATTCCCTCCCGATGAAATCGTCGGAGGACTCGCCACCGAAGAAGACACCACCATTGACATCCACACCACCCACGGCGCCCCCATTCGCTACCTCCCTCTCGATCATCTCTACTCCTCCACATCCCCTTGCAGCGGCTCCTCCAACGTCATGTCCAAAAAAGTTAAAGCTCGTAAACTCACCCTAACCACAGCCACTACTCCCAACCACAACAACAACAGCGAAGACGATAACAATAATAACATCCACTTCAATGGTGAAATCGAAATCGATATTGATTATCCGATTGATGATGATAAGAAAACCACGTCTACATCTATGGTGGTTTACACTAAACCGCCTCTTCTGTATGTTTACTCTCGGCGAAGAAAGAGGAGTTCGATTCCGGTGTCGTTTCGCGATTCGTTGTTAAGGAGGCGGGAGGAGATGGATGCTGAGAGGACTGTGTTGAAGAGGAGGAGAATTGGGAATAATGAATTGGAGAGATTAGGGATTGATTGGAATGCGTTGGGGAAAATTGATGGACCGAGGTTGAGGGAATGTAGGAATCCAATTGGGAATTCTGGTGTTGATGGGAGGAATAATGATAATAACAAGTGTAGTTCTGCTGTTAAGGTTCCGAGGTTGGCGCCGGAGTCTTACTCGATGAAGCGATGGGTCGCGTTGAGTTTTGATGGCGCCGATCCCAAGGCTTTTGTCGGATTGAAATGCAAGGTTTACTGGCCCATGGATTCAAAATCATACACTGGCCATGTCAAAAGTTATGACAGGGAAGCCAATATACATCATATTGAGTATGATGATGGAGATGAGGAAAATTTAACTCTTTCAAATGAAAATGTAAAATACCATGTTTCTCGAAATGACATGGAACGCTTAAAATTGAGTTACGCCAAAGTTCGTGACAGTAATGTCTCTGATTATGATGTTGAAGAGATGCTCGCACTGGCTGCAAGCATGGATGATTGCCAAGACTTTGAGCCAGGGGATATCATATGGGCGAAGCTTACAGGTTATGCAATGTGGCCTGCTGTTGTCCTGGATGAATCACTTGCTAGCAGCTGTAAGGGTCTAAAAACATTCATAGGGGGGAGATCGGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGAGTTCGACTGCAACAGGTGAAATCATTTCTCAATGGACTTCTAACAGATCTACACTCAAAGTGCAAGAAACAGAGTTTCATCGATGGTTTAGAAGAGGCAAAAAGGTATTTAAGTGCACAGAAGCTTCCTTTGGAGATGATAGAACTGCGGAAAAGATGTACAGCTGATAACCATAACAATATAAGGGGAGAGAATGGAGGATGTACAGATTCTGGTGAAGACTGTGTAAATGACAAAGGGACTTGGGCAGCACTTCAAAACATTGATACTTTTCCTTATGAAGTGGGAGACTTGCAAATTCTAAGCCTTGGAAAAATAGTTGGAAATTCCACTGCTTTTAGGGATGGAAAATCTATCTGGCCTGAAGGGTACACAGCAGTGAGGAAATTCACTTCAGTTACTGACCCTAAAGTATCCGTCCCTTATAAGATGGAGGTTCTGAGAGACCCAGAATCCAGAATCAGACCATTATTCAGAGTGACAGTTGATGGTGGTGAGCAGTTCAATGGTTATACGCCATCTTCTTGCTGGAATCAAATATACGAAAGGATAAAGAAATTGGAAAAGGTTGTTTCTGAAAGTTCCGTTGCTGATGGTGACATAGAAAGTGTCTACGAATCCGGCTCTGATATGTTTGGTTTTTCCAATTCTAAAGTGGCTAAACTTATTAAGGGATTATCTAAGTCCAAAGTCTCTTTGAAGAAATCAACGTGCAAGTCAGGTTCCGGATTGCCTCTTGGTTATAGACAAGTTCATATTAATTGGTTTGATCTCGATAAGTGCAATGTGTGCCATATGGACGAGGAGTATGAGACCAATCTGTTTCTGCAGTGTGACAAATGTAGAATGATGGTCCATGCTAGATGCTATGGAGAATTGGAACCTGTAAATGGAGTGCTATGGTTATGCAAATTATGTCGCTCGGGTGCTCCTCCCCCACCATGTTGCTTATGTCCACTCATAGGTGGTGCAATGAAGCCTACTACAGATGGCCGGTGGGCTCATTTGGCTTGTGCGATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAGTAGAATCAGTAAGGACCGTTGGAAATTGTTATGCAGCATATGTGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAACAATTCTTGTCGCGTAGCGTATCATCCACTCTGTGCACGTGCAGCTGGTCTTTGCGTTGAGCTTGAGAGCGAGGACAGGCTCCATCTACTATCCCTAGATGACGATGAGGATCAGTGCATTCGCTTACTTTCTTTTTGCAAGAGACATAGGCAGCCATCTCATGAAAATTCTGTAGCCGATGAACGTGTTCAGATTATTGGTCAATGTTCAGATTATAAACCACCACCCACTTCATCTGGTTGTGCCCGAAGTGAGCCATATGATTACTCTGGTCGGAGAGGCAGAAAAGAACCTGAAGTACTTGCAGCTTCTTCGCTGAAACGTTTGTTTGTGGAGAATCAACCATATTTAGTTGGTGGATACTGCCAACATGGATTGTTGAACGCCCTAGAGCCTTCTGGCAGAGGAGTTTGCTCTAAATTCTTTTGTAGCGAGCAAAGGCTAAGAACGTCGATGAGTGATTCTGCAGACAACATACTTAGTGTTCCTGAGAAATATAAGTACATGAAGGAAACCTTCCGGAAGCAGTTGGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTCGCAAAGCATCCATATAAAGGTGGAGACATGGTGATTGAATATACCGGTGAACTTGTTAGACCTTCTATTGCTGATCGAAGAGAGCATTTTATATACAATTCTTTGGTGGGTGCTGGAACATATTTGTTTCGGGTTGATGATGGAAGAGTCATTGATGCCACCAGAGCAGGAAGCATCGCTCATTTAATTAATCATTCCTGTGCACCAAATTGCTATTCAAGAGTCATTAGTGTTAACGGGGACGAGCATATTATAATATTTGCAAAGAGGGACATTAACCAATGGGAAGAGCTTACATATGATTATAGATTTTTCTCAATAGACGAGCGGCTTGCTTGTTACTGTGGCTTCCCAAAATGTCGAGGTGTAGTAAATGATACTGAGGCAGAAGAGCGAGCTGCTACCATATATGTACCGCGAAGTGAATTAGTAGATTGGAAAGGAGAATGA 3318 0.4325 MAFPPDEIVGGLATEEDTTIDIHTTHGAPIRYLPLDHLYSSTSPCSGSSNVMSKKVKARKLTLTTATTPNHNNNSEDDNNNNIHFNGEIEIDIDYPIDDDKKTTSTSMVVYTKPPLLYVYSRRRKRSSIPVSFRDSLLRRREEMDAERTVLKRRRIGNNELERLGIDWNALGKIDGPRLRECRNPIGNSGVDGRNNDNNKCSSAVKVPRLAPESYSMKRWVALSFDGADPKAFVGLKCKVYWPMDSKSYTGHVKSYDREANIHHIEYDDGDEENLTLSNENVKYHVSRNDMERLKLSYAKVRDSNVSDYDVEEMLALAASMDDCQDFEPGDIIWAKLTGYAMWPAVVLDESLASSCKGLKTFIGGRSVPVQFFGTHDFARVRLQQVKSFLNGLLTDLHSKCKKQSFIDGLEEAKRYLSAQKLPLEMIELRKRCTADNHNNIRGENGGCTDSGEDCVNDKGTWAALQNIDTFPYEVGDLQILSLGKIVGNSTAFRDGKSIWPEGYTAVRKFTSVTDPKVSVPYKMEVLRDPESRIRPLFRVTVDGGEQFNGYTPSSCWNQIYERIKKLEKVVSESSVADGDIESVYESGSDMFGFSNSKVAKLIKGLSKSKVSLKKSTCKSGSGLPLGYRQVHINWFDLDKCNVCHMDEEYETNLFLQCDKCRMMVHARCYGELEPVNGVLWLCKLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELESEDRLHLLSLDDDEDQCIRLLSFCKRHRQPSHENSVADERVQIIGQCSDYKPPPTSSGCARSEPYDYSGRRGRKEPEVLAASSLKRLFVENQPYLVGGYCQHGLLNALEPSGRGVCSKFFCSEQRLRTSMSDSADNILSVPEKYKYMKETFRKQLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYLFRVDDGRVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDINQWEELTYDYRFFSIDERLACYCGFPKCRGVVNDTEAEERAATIYVPRSELVDWKGE 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00706 1105 CDD PWWP_AtATX1-like 328 423 - -
Vivi6g00706 1105 SUPERFAMILY FYVE/PHD zinc finger 632 702 IPR011011 -
Vivi6g00706 1105 ProSiteProfiles FYR domain FYRN motif profile. 470 529 IPR003888 GO:0005634
Vivi6g00706 1105 Pfam PWWP domain 330 417 IPR000313 -
Vivi6g00706 1105 Gene3D - 471 611 - -
Vivi6g00706 1105 PANTHER PHD FINGER PROTEINS 40 1087 - -
Vivi6g00706 1105 SMART fyrc_3 537 625 IPR003889 GO:0005634
Vivi6g00706 1105 ProSiteProfiles PWWP domain profile. 329 392 IPR000313 -
Vivi6g00706 1105 Pfam F/Y rich C-terminus 535 608 IPR003889 GO:0005634
Vivi6g00706 1105 Pfam SET domain 952 1058 IPR001214 GO:0005515
Vivi6g00706 1105 SMART set_7 941 1065 IPR001214 GO:0005515
Vivi6g00706 1105 ProSitePatterns Zinc finger PHD-type signature. 641 686 IPR019786 -
Vivi6g00706 1105 Gene3D - 229 286 - -
Vivi6g00706 1105 CDD PHD_ATX1_2_like 640 686 IPR042010 -
Vivi6g00706 1105 SMART fyrn_3 485 529 IPR003888 GO:0005634
Vivi6g00706 1105 CDD ePHD_ATX1_2_like 701 815 IPR041956 -
Vivi6g00706 1105 CDD SET_SETD1-like 928 1077 - -
Vivi6g00706 1105 Gene3D SET domain 901 1093 IPR046341 -
Vivi6g00706 1105 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 633 689 IPR013083 -
Vivi6g00706 1105 SMART PWWP_4 327 390 IPR000313 -
Vivi6g00706 1105 SUPERFAMILY Tudor/PWWP/MBT 323 424 - -
Vivi6g00706 1105 FunFam Histone-lysine N-methyltransferase 690 818 - -
Vivi6g00706 1105 SUPERFAMILY SET domain 938 1078 IPR046341 -
Vivi6g00706 1105 ProSiteProfiles SET domain profile. 941 1059 IPR001214 GO:0005515
Vivi6g00706 1105 CDD Tudor_Agenet_AtEML-like 234 284 - -
Vivi6g00706 1105 ProSiteProfiles Post-SET domain profile. 1065 1081 IPR003616 -
Vivi6g00706 1105 SMART PostSET_3 1065 1081 IPR003616 -
Vivi6g00706 1105 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 690 818 IPR013083 -
Vivi6g00706 1105 Gene3D - 317 426 - -
Vivi6g00706 1105 Pfam PHD-zinc-finger like domain 694 815 - -
Vivi6g00706 1105 FunFam Histone-lysine N-methyltransferase 874 1098 - -
Vivi6g00706 1105 Pfam PHD-finger 652 687 - -
Vivi6g00706 1105 Pfam F/Y-rich N-terminus 476 526 IPR003888 GO:0005634
Vivi6g00706 1105 ProSiteProfiles Extended PHD (ePHD) domain profile. 692 816 IPR034732 -
Vivi6g00706 1105 SMART PHD_3 750 816 IPR001965 -
Vivi6g00706 1105 SMART PHD_3 640 687 IPR001965 -
Vivi6g00706 1105 Coils Coil 134 154 - -
Vivi6g00706 1105 ProSiteProfiles Zinc finger PHD-type profile. 638 689 IPR019787 -
Vivi6g00706 1105 ProSiteProfiles FYR domain FYRC motif profile. 533 619 IPR003889 GO:0005634
Vivi6g00706 1105 MobiDBLite consensus disorder prediction 840 859 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00706 Vivi-Chr6 21766675 21780915 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00706 621 786 C2H2 Transcription Factor Family AT3G14740 38.596 5.65e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi6g00706 zf-HC5HC2H_2 5.5e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00706 - - gmx:100808923 1749.18