Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00701 ATGTCTTCTCTACCTTATTGTTCCATTGCAATTTGTGTTACAATTTTCCTCCACCTATCTTCCTCTGCACTTTCCCATCCTAACAAAATCAACCATTTACCAGGTCAACCTCATGTTGAGTTTAACCAGTTTTCAGGCTATGTTAATGTTGATAACAAAAACCAAAAAGCACTCTTTTTCTACTTTGTTGAAGCTCAGAATGATGCTGCTTCTAAACCTCTTGTTCTGTGGCTCAATGGAGGGCCCGGTTGTTCTTCTCTTGGTGTTGGTGCATTTTCAGAAAATGGCCCTTTTAGGCCTAAAGGACAGGCTTTGGTTAGCAACCAATTCAGCTGGAATACAGAGGCAAATATGTTGTACTTGGAATCACCTATTGGAGTAGGATTTTCATATTCAACTGATACTTCATCTTATGAAGGTGTAAATGACAAAATTACAGCCAGGGATAATCTAATCTTCTTGCAAAACTGGTTTGTAAAGTTTCCACAATACAGAAACAGAAGCTTGTTCATTGTAGGAGAGAGCTATGCTGGTCATTATGTTCCTCAATTGGCTGAGCTTATGCTTCAATTCAACAAAAAGGAGAAGCTGTTCAATTTAAAAGGCATTGCTCTCGGCAATCCACTACTAGAATATGCAACAAATTTAAACTCAAGAGCTGAGTTTTTTTGGTCACATGGATTGATCTCAGACTCAACATTCAAAATGTTCACTTCTGTTTGTAACTATTCAAGATATGTGAGGGAATACTATAACGGCGCAGTTTCTCCTCTTTGTTCGAGTGTGATGAGCCGAGTTACTACAGAAACAAGTAGATTTGTCGACAAGTATGATGTTACACTCGACGTTTGTATATCGTCTGTGTTTTCACAAACCAAAGTCCTCAATCCCAAGCAAGTGAATGAAACAATTGATGTATGCGTGGAAGACGAAACGCTCAACTATCTTAACAGAAAAGATGTTCAATCGGCTTTAAACGCACGTCTGGTCGGAATACAAAGATGGTCTCCTTGTAGCAATGTCTTGGATTATGAGTTGCGCGATTTGGAGATACCGACGATTACTGTCGTAGGCAAGCTAGTCAAGGCCGGAATACCAGTATTGGTCTATAGTGGTGATCAGGATTCGGTTATTCCATTGACCGGAAGCAGAACTTTAGTAGATCAATTGGCAAAAACACTGAGAATCAATACCACTGTGCCCTACAGGGTGTGGTTCGAAAGGCAGCAGGTTGGAGGGTGGACTCAAGTTTATGGTAACATACTATCATTTGCAACAGTTAGAGGAGCATCACATGAAGCACCCTTTTCACAACCTGAGAGATCACTTGTGTTGTTTAAGTCCTTTTTAGAAGGAAAGCCTCTACCAGAAGAATTTTGA 1380 0.4 MSSLPYCSIAICVTIFLHLSSSALSHPNKINHLPGQPHVEFNQFSGYVNVDNKNQKALFFYFVEAQNDAASKPLVLWLNGGPGCSSLGVGAFSENGPFRPKGQALVSNQFSWNTEANMLYLESPIGVGFSYSTDTSSYEGVNDKITARDNLIFLQNWFVKFPQYRNRSLFIVGESYAGHYVPQLAELMLQFNKKEKLFNLKGIALGNPLLEYATNLNSRAEFFWSHGLISDSTFKMFTSVCNYSRYVREYYNGAVSPLCSSVMSRVTTETSRFVDKYDVTLDVCISSVFSQTKVLNPKQVNETIDVCVEDETLNYLNRKDVQSALNARLVGIQRWSPCSNVLDYELRDLEIPTITVVGKLVKAGIPVLVYSGDQDSVIPLTGSRTLVDQLAKTLRINTTVPYRVWFERQQVGGWTQVYGNILSFATVRGASHEAPFSQPERSLVLFKSFLEGKPLPEEF 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00701 459 Pfam Serine carboxypeptidase 35 452 IPR001563 GO:0004185|GO:0006508
Vivi6g00701 459 ProSitePatterns Serine carboxypeptidases, serine active site. 171 178 IPR018202 GO:0004185
Vivi6g00701 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 182 IPR001563 GO:0004185|GO:0006508
Vivi6g00701 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 131 IPR001563 GO:0004185|GO:0006508
Vivi6g00701 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 422 435 IPR001563 GO:0004185|GO:0006508
Vivi6g00701 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 108 120 IPR001563 GO:0004185|GO:0006508
Vivi6g00701 459 FunFam Carboxypeptidase 353 452 - -
Vivi6g00701 459 Gene3D alpha/beta hydrolase 23 457 IPR029058 -
Vivi6g00701 459 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 29 439 IPR001563 GO:0004185|GO:0006508
Vivi6g00701 459 SUPERFAMILY alpha/beta-Hydrolases 31 456 IPR029058 -
Vivi6g00701 459 ProSitePatterns Serine carboxypeptidases, histidine active site. 422 439 IPR033124 GO:0004185
Vivi6g00701 459 FunFam Carboxypeptidase 23 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00701 Vivi-Chr6 21480971 21484706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00701 315 455 Calmodulin-binding Proteins AT2G22960 27.660 1.37e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00701 K16297 - gmx:100805130 805.053