Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00694 ATGGTTTCTGGTCTCTCTCAAGTTATTGGAAGTTCTAATAATAATAATCCACACATGGCACAACCAACTTCAAGTACTATTATCAATAAAGAATCTCAACCTCTTGTAGATCAAGAACCAAAAAAAAAACCTCACTATAGAGGAGTGAGACAAAGACCATGGGGAAAATGGGCAGCAGAAATACGTGACCCAATAAAAGCAGCTAGAGTTTGGCTAGGAACATTTGACACAGCTGAAGATGCAGCTCTTGCTTATGACAAAGCAGCACTCAAATTCAAAGGCACAAAAGCTAAACTCAATTTCCCCGAAAGAGTTGTTCAATGCAACAACAATAGTAATTCTAGTGCAATTCAACAAAGTGGTTCTTCTGTTGATAATCAACAAGTTTTTCCGAATTTGTTTCAATATGCTCAGATTCTCTCTAGTGATGCCGAGTTTCCTTATTATGCGTCTCATCTTTTTAATCAAGATCAACAACAACAAGGAGATGATGTTAATCGCCCGCCTGGCTAG 513 0.3801 MVSGLSQVIGSSNNNNPHMAQPTSSTIINKESQPLVDQEPKKKPHYRGVRQRPWGKWAAEIRDPIKAARVWLGTFDTAEDAALAYDKAALKFKGTKAKLNFPERVVQCNNNSNSSAIQQSGSSVDNQQVFPNLFQYAQILSSDAEFPYYASHLFNQDQQQQGDDVNRPPG 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00694 170 Gene3D AP2/ERF domain 45 104 IPR036955 GO:0003700|GO:0006355
Vivi6g00694 170 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Vivi6g00694 170 MobiDBLite consensus disorder prediction 1 33 - -
Vivi6g00694 170 CDD AP2 44 103 IPR001471 GO:0003700|GO:0006355
Vivi6g00694 170 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Vivi6g00694 170 PANTHER DNA-BINDING DOMAIN 31 131 IPR044808 GO:0003700|GO:0009873
Vivi6g00694 170 MobiDBLite consensus disorder prediction 1 50 - -
Vivi6g00694 170 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Vivi6g00694 170 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Vivi6g00694 170 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Vivi6g00694 170 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Vivi6g00694 170 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00694 Vivi-Chr6 21273300 21276461 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00694 1 154 AP2-EREBP Transcription Factor Family AT5G13330 50.289 2.49e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi6g00694 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00694 - - mtr:11443305 236.113