Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00689 ATGCAATTCGCTAAGCTTGATGATTCTCCTATGTTCCGCAAGCAGATACAATGCATGGAGGAAAGTGCTGAGTCTTTAAGAGAGAGAAGTTTGAAATTTTACAAGGGATGCAGAAAATACACGGAAGGACTTGGGGAGGCATATGATGGAGATATTGCATTTGCAAGTGCCTTAGAAACTTTTGGTGGGGGTCATAATGACCCCATCAGTGTAGCTTTTGGAGGCCCTGTTATGACCAAATTCACTATAGCCTTAAGAGAAATCGGGACATACAAGGAAGTCCTTCGATCACAGGTTGAGCATATGTTAAATGACAGATTGCTCCAGTTTGTCAATATTGATCTGCAAGAGGTCAAGGAAGCTCGAAAACGCTTTGACAAAGCCAGCCTTATTTATGACCAGACTCGTGAAAAGTTTCTGTCACTGAGAAAAGGTACAAAAACTGATGTAGCTCATGCCTTAGAAGAGGAGCTTCATAGTGCAAGAGCTACGTTTGAGCAAACTCGGTTTAATCTGGTTACTGCCTTGTCAAATGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGTTACTTCAAACAGGGGTATGAACTATTGCATCAAATGGAGCCATACATTAACCAGGTCTTGACTTATGCTCAACAATCAAGAGAAAGGTCCAATTATGAGCAAGCAGCGCTCAATGAAAGAATGCAAGATTACAAACGGCAGATTGATCGAGAAAGTAGGTGGGCTTCTAATGGTTCTAATGGTTCTCCTAACGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAAGCAGTAATGCAAAATGCTGCAAAGGGAAAGGTTCAGACTATTCGACAAGGATATCTCTCGAAGCGTTCCTCAAACTTAAGGGGAGACTGGAAAAGGAGGTTTTTCGTTCTTGATAGCCGGGGAATGCTGTATTACTACCGTAAGCAAATCAGCAAATCATCTGGGTCTAGCAGTCAACATTCTGGTCAAAGGAATAGTTCAGAGCTCGGTTCTGGACTTCTAAGTCGATGGCTGTCTTCTCATCATCATCATCATGGTGGAGTACATGATGAGAAATCCGTTGCTCATCACACTGTGAACCTGCTTACATCAACAATCAAAGTTGACGCTGACCAATCAGATTTGAGATTTTGCTTCAGGATAATTTCACCGACAAAGAACTACACTTTGCAGGCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAAATCACAGGTGTTATTGCCTCGTTGCTAAGTTCTCAGATTCCTGAAAGGTTGTTATCGGCAAGTCCAATGGGAAGTGGTCATCATAGGTCTACAAGTGAGAGCAGTTCTTTTGAAAGTTCAGATTTTGATCACTCTGCTGTTGAAGAAAGTGCAGCTGATAGATTTGCATCCTCACATCTAGAACGTGCCTCCAGAAGTTTGAACCAGCAGCGATCCTGTAATAAAAGTGAGAAACCAATTGATGTGTTGCGAAGAGTTATTGGGAATGATAAATGTGCTGATTGTGGGGCTTCTGAACCTGATTGGGCGTCACTAAATCTTGGCGTTCTTGTTTGCATTGAATGTTCTGGTGTTCATCGAAATCTCGGTGTGCACATATCCAAGGTCCGCTCTCTCACATTGGACGTTAAGGTGTGGGAACCTTCTGTGATAAGTTTATTTCAGTCTCTAGGGAATGCCTTTGCCAACTCAGTCTGGGAGGAACTTTTGCAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAGGCTCGAGCAAGTCTGATAAGCCACAAACGGTTTTCATCACCAAACCCGGTCAATATGATTCTCTATCAGTGAAGGAAAAGTTCATTCATGCAAAGTATGCAGAGAAGATTTTTGTTCGCAAGCCGAAGGACAATCAATACCAGCTTCTAGTGGCACAACAGATCTGGGAGGCTGTTCGTGCTAATGACAAAAAAGCTGTATATCGCTACATTGTTAATTCTGACGTTGATGTCAATGTTGTTTATGAGCAAGCATGCAACAACTCTTTAACCCTTGCCAAAGTCATGCTATTACAAGAGCAGGCAAACCATGATCAGGGCTCTAATTTAGCAGGGAACACATTGGACTGGTCCTCCAATTGCTCTTTGAATTTAGTAGGCACTAAAGAAGGCCAGACAATGGACAATCTCGAAGGTTGCACACTACTTCACATTGCTTGTGAAACTGCGGACATTGGAATGGTGGAGCTCCTCCTGCAATATGGTGCGAATATTAATGCGAGCGATTTGAGAGGCAGAACTCCTTTACATCGCTGTATTCTCAAAGGAAGATCTATAATTGCAAGATTACTTCTTTCAAGGGGAGGCGATCCTCGAGCTGTGGACGAGGAGGGAAGAACCCCTATTGAGCTTGCTGCAGAATCAAATGCTGATGAAAGACAAGTCCATGCACCATCAACTGATTCAAATGGATGA 2496 0.4275 MQFAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTREKFLSLRKGTKTDVAHALEEELHSARATFEQTRFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQDYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQNAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQISKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERLLSASPMGSGHHRSTSESSSFESSDFDHSAVEESAADRFASSHLERASRSLNQQRSCNKSEKPIDVLRRVIGNDKCADCGASEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNAFANSVWEELLQSRSAFQVDLVPTGSSKSDKPQTVFITKPGQYDSLSVKEKFIHAKYAEKIFVRKPKDNQYQLLVAQQIWEAVRANDKKAVYRYIVNSDVDVNVVYEQACNNSLTLAKVMLLQEQANHDQGSNLAGNTLDWSSNCSLNLVGTKEGQTMDNLEGCTLLHIACETADIGMVELLLQYGANINASDLRGRTPLHRCILKGRSIIARLLLSRGGDPRAVDEEGRTPIELAAESNADERQVHAPSTDSNG 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00689 831 SMART ANK_2a 738 767 IPR002110 GO:0005515
Vivi6g00689 831 SMART ANK_2a 771 800 IPR002110 GO:0005515
Vivi6g00689 831 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 483 647 - -
Vivi6g00689 831 ProSiteProfiles Ankyrin repeat region circular profile. 738 769 - -
Vivi6g00689 831 MobiDBLite consensus disorder prediction 253 269 - -
Vivi6g00689 831 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Vivi6g00689 831 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Vivi6g00689 831 PANTHER CENTAURIN/ARF 3 824 IPR045258 GO:0005096
Vivi6g00689 831 Gene3D Arf GTPase activating protein 480 645 IPR038508 -
Vivi6g00689 831 SUPERFAMILY ArfGap/RecO-like zinc finger 501 641 IPR037278 -
Vivi6g00689 831 ProSiteProfiles Ankyrin repeat profile. 771 803 IPR002110 GO:0005515
Vivi6g00689 831 CDD PH_ACAP 295 434 - -
Vivi6g00689 831 SMART arf_gap_3 501 646 IPR001164 GO:0005096
Vivi6g00689 831 CDD BAR_SFC_plant 14 215 IPR035670 -
Vivi6g00689 831 CDD ArfGap 504 633 - -
Vivi6g00689 831 MobiDBLite consensus disorder prediction 443 464 - -
Vivi6g00689 831 SUPERFAMILY PH domain-like 293 447 - -
Vivi6g00689 831 MobiDBLite consensus disorder prediction 249 270 - -
Vivi6g00689 831 Pfam Ankyrin repeats (many copies) 741 792 IPR002110 GO:0005515
Vivi6g00689 831 Gene3D - 646 820 IPR036770 -
Vivi6g00689 831 Coils Coil 227 247 - -
Vivi6g00689 831 Pfam Putative GTPase activating protein for Arf 504 641 IPR001164 GO:0005096
Vivi6g00689 831 PRINTS HIV Rev interacting protein signature 555 576 IPR001164 GO:0005096
Vivi6g00689 831 PRINTS HIV Rev interacting protein signature 513 532 IPR001164 GO:0005096
Vivi6g00689 831 PRINTS HIV Rev interacting protein signature 532 549 IPR001164 GO:0005096
Vivi6g00689 831 Gene3D - 285 440 IPR011993 -
Vivi6g00689 831 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Vivi6g00689 831 SUPERFAMILY Ankyrin repeat 657 817 IPR036770 -
Vivi6g00689 831 ProSiteProfiles Ankyrin repeat region circular profile. 771 803 - -
Vivi6g00689 831 Pfam PH domain 294 429 IPR001849 -
Vivi6g00689 831 MobiDBLite consensus disorder prediction 797 831 - -
Vivi6g00689 831 ProSiteProfiles Ankyrin repeat profile. 738 770 IPR002110 GO:0005515
Vivi6g00689 831 ProSiteProfiles ARF GTPase-activating proteins domain profile. 501 646 IPR001164 GO:0005096
Vivi6g00689 831 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Vivi6g00689 831 SMART PH_update 293 432 IPR001849 -
Vivi6g00689 831 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Vivi6g00689 831 ProSiteProfiles PH domain profile. 292 430 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00689 Vivi-Chr6 21004010 21011477 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00689 513 640 C2H2 Transcription Factor Family AT4G21160 43.411 2.28e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00689 K12489 - gmx:100789134 1419.83