Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00688 ATGGGATTGATTTGTGGGTGTGACTTTGTTGGTTGTGTTTTGATGTTTAGGAAAAGACAAACCCTTTTTTCTCTTTCAAATAGGTTGTTGGTGTTTCAGCTTCTTGTGCTGTTCTTGTTTTGTTTGCATCATGATAATAGAGTGCAATGTCATGGGAGATTGAGTAAACATGTATCTTATGAGTCTCGATCGGGGTCGGGGTCGGGGTCGGAATACAAGGATGATTCTAAGAAGATTATTGTTAGTGTAGTTTTAGGAGTGATCACTGGATTAATTGGTTCGATTCTGTTTGCGTTTGTGATTCGTTGTGTCGTTCGGTATCTGAATAGAACGCCTATCCTTAAAGGACCGGTGATATTCTCGCCGAAGATTGCCTCGAAGACGCTCCAATTAGCTTTGTCGAAAGAAAACCATTTGCTTGGTTCGAGTGCGAATGGGAAGTACTACAAAACTGTTCTTGAGAATGGTCTCATAATTGCGGTGAAAAAGCTTACACCGTTCGAGAGCAATTCGCAAGAGAGTAGGAGAAAATCGGTGAAGAGGAAGATACAGATGGAGCTAGAGCTTCTTGCAAGCTTGAGACACAGGAATTTGATGAGTTTGAGGGCTTATGTTCGCGGAAACGATGGATTCTCATTGGTTTATGATTATGTGTCGACCGGGAGTCTCGCGGATGTGATGAATAGGGTTAGGGAAAATGAGTTGCAGATTGGTTGGGAAGTTAGGTTGAGGATTGCTGTTGGTGTGGTGAAGGGTCTTCAATATCTTCATTACACTTGTGTGCCTCAGATTTTGCATTTCAATTTGAAGCCTACTAATGTGATGTTGGATGCCGAGTTTGAACCTAGATTGGCTGATTATGGTTTGGCTAAACTTCTACCAAACTTAGATAGAGGGAATTCTCTCAACACCCCTCCCGAATGTTTCCTGAATTCCAGCAGGTACACAGAAAAAAGTGACATATTCAGTTTTGGGATGATACTAGGCGTTTTATTAACCGGTAAGGACCCTACGGATCCGTTCTTTGGAGAAGCGGAGAGAGGTGGAAGTTTGGGATGTTGGCTGCGACACTTGAAGCAAGCGGGCGAGGAACGAGAAGCTCTGGATAAGAGTATTTTGGGGGAACAAGGTGAAGAAGATGAGATGCTAATGGCTGTTGGGATTGCTGCTGCATGCTTATCTGATATGCCTGCTGATAGACCTTCAAGCGACGAACTTGTTCACATGCTAACACAGCTTAATAGTTTTTGA 1251 0.4301 MGLICGCDFVGCVLMFRKRQTLFSLSNRLLVFQLLVLFLFCLHHDNRVQCHGRLSKHVSYESRSGSGSGSEYKDDSKKIIVSVVLGVITGLIGSILFAFVIRCVVRYLNRTPILKGPVIFSPKIASKTLQLALSKENHLLGSSANGKYYKTVLENGLIIAVKKLTPFESNSQESRRKSVKRKIQMELELLASLRHRNLMSLRAYVRGNDGFSLVYDYVSTGSLADVMNRVRENELQIGWEVRLRIAVGVVKGLQYLHYTCVPQILHFNLKPTNVMLDAEFEPRLADYGLAKLLPNLDRGNSLNTPPECFLNSSRYTEKSDIFSFGMILGVLLTGKDPTDPFFGEAERGGSLGCWLRHLKQAGEEREALDKSILGEQGEEDEMLMAVGIAAACLSDMPADRPSSDELVHMLTQLNSF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00688 416 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 65 412 - -
Vivi6g00688 416 SUPERFAMILY Protein kinase-like (PK-like) 137 411 IPR011009 -
Vivi6g00688 416 ProSiteProfiles Protein kinase domain profile. 134 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00688 416 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 218 415 - -
Vivi6g00688 416 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 126 217 - -
Vivi6g00688 416 Gene3D Transferase(Phosphotransferase) domain 1 218 415 - -
Vivi6g00688 416 Pfam Protein kinase domain 136 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00688 416 Gene3D Phosphorylase Kinase; domain 1 121 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00688 Vivi-Chr6 20983943 20986262 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00688 80 413 Receptor kinase-like Gene Family AT2G31880 35.014 1.45e-58 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Vivi6g00688 Pkinase 9.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00688 - - gmx:102664273 632.098