Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00682 ATGTTTCCTTCTACTTATTGTTCTTTAGGTTCTTACCCTAGCTATAATCCTAATTCATCTTCTTCTTCTTCTTCACATTCATACCCTCCTTTTACTTACCTTACCCCTGATCAACAAAATGCTTCTTCAAATAACAACAACAATATCAACACTTTTCTTCATGATCCAACTATTTCTGTTCCATACACACAAACTTCACATCATCATCATGTTCCAATGAATCCTGAAACTCTAACAAATTGGGCTGTTGCTGATTATGCTGCAATGTTGAAACAAGATCTAACCGGTTCTACTTCTCATTACAACTTCTCGAATTTGCTTGCCAAAAAGCCGGTGAAGAAACCGGCGAAGAAAGACCGGCACAGCAAGATTCATACATCTCAAGGATTGAGAGACAGAAGGGTGAGACTCTCGATTGAGATAGCGCGGAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGACAAAGCTAGCAACACACTTGAGTGGCTTTTCAACAAATCAAAAGAAGCAATTGAAGAGTTAACTAGAAGCAAGAACAATATAGCTTCTGGTGAGGATGGTGTTGATGATCATAGCTTCTCTTCTTCTTCGTCCGACGGAGAAGAAGACGAAGCGAGAAAGATGAAAAGGGCACAGAAGGAATCTTCAAAGATGAAAGACTCAAGAGAAAAAGCAAGAGCAAGAGCAAGAGAAAGAACAAGTGAAATGAAGATTCAAGATTTGAAGGAAAAGTACCCAGAAACTGAGCATAATCAACAAATTCTTCATCAATTGATGCCGAACGACGAGGAAAATTCGAAACTAGTTCAAAGAGATGATATCTTTAACTTCATAGAGGAATCAATTGTGATTAAGAGAAAGTTGAAGAAATCTTCTTCAAATCATCATCATCAACAAAACTCTAATTTGATGCCTAAGGAAGTAAGTTTTGATCACAATGACTCTCCAATGTTAACACCAAATTGGGATACTAATAATAATAATAACAATGCTGCTGCAAATGGAAGATCCAACTTTTCTACAATATCAAGAATGAATCTATCATCAGGGCTTCAAATCTTTGGAAAATCATGGGAAGAATGCAATAACAGTCAAAATAGATATTAG 1110 0.3667 MFPSTYCSLGSYPSYNPNSSSSSSSHSYPPFTYLTPDQQNASSNNNNNINTFLHDPTISVPYTQTSHHHHVPMNPETLTNWAVADYAAMLKQDLTGSTSHYNFSNLLAKKPVKKPAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKEAIEELTRSKNNIASGEDGVDDHSFSSSSSDGEEDEARKMKRAQKESSKMKDSREKARARARERTSEMKIQDLKEKYPETEHNQQILHQLMPNDEENSKLVQRDDIFNFIEESIVIKRKLKKSSSNHHHQQNSNLMPKEVSFDHNDSPMLTPNWDTNNNNNNAAANGRSNFSTISRMNLSSGLQIFGKSWEECNNSQNRY 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00682 369 MobiDBLite consensus disorder prediction 182 239 - -
Vivi6g00682 369 MobiDBLite consensus disorder prediction 16 50 - -
Vivi6g00682 369 Pfam TCP family transcription factor 116 238 IPR017887 -
Vivi6g00682 369 MobiDBLite consensus disorder prediction 196 239 - -
Vivi6g00682 369 Coils Coil 209 245 - -
Vivi6g00682 369 ProSiteProfiles TCP domain profile. 117 175 IPR017887 -
Vivi6g00682 369 ProSiteProfiles R domain profile. 220 237 IPR017888 -
Vivi6g00682 369 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 26 338 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00682 Vivi-Chr6 20663782 20665574 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00682 54 330 TCP Transcription Factor Family AT1G67260 34.405 6.71e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vivi6g00682 TCP 4.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00682 - - cam:101489716 408.683