Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00676 ATGTTTCCTTCCACTTATTGCTCTTTAGGTTCTTACCCTAATTATAATCCTAATTCTTCTTCTTCTTCATCTTCACATTCATACCCTCCTTTTACTTACCTTACCCCTGATCAACAAAATGCTTCTTCAATCAACAATACCAACAACAATATCAACACTTTTCTTCATGATCCAACTATTTCTGTTCCATTCACACAAACTTCACATCATCATCATCATGTTCCTATGAATCCTGAAACTCTAACAAATTGGGCTATTGCTGATTATGCTGCAATGTTGAAACAAGATCTAAGTGCTTCTTCTCATTACAACTTCTCGAATTTGCTTGCCAAAAAGCCGGTGAAGAAACCGGCGAAGAAAGACCGGCACAGCAAGATTCATACATCTCAAGGTTTGAGAGACAGAAGGGTGAGACTCTCGATCGAGATAGCGCGGAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGACAAAGCTAGCAACACACTGGAGTGGCTTTTCAACAAATCAAAAGAAGCAATTGAAGAGTTAACCAGAAGCAAAAACAGTATAGCTTCTGGTGAGGATGGTGTTGATGATCATAGCTTCTCTTCTTCTTCGTCCGACGGAGAAGAAGACGAAGAGAGAAAAATGAAAAGGGCACAGAAAGAATCTTCAAAGATGAAAGACTCAAGAGAAAAAGCAAGAGCAAGAGCAAGAGAAAGAACAGGTGAAATGAAGATTCAAGATTTGAAGGAAAAGTACCCAGAAACTGAGCATAATCAACAACAAATTCTTCATCAATTGATGCCGAACGACGAGGAAAATTCGAAACTAGTTCAAAGAGATGATATCTTTAACTTTATAGAAGAATCAATTGTGATTAAGAGAAAGTTGAAGAAATCTTCTTCACATCATCATCAACAAAACTCTAATTTGATGCCTAAGGAAGTAAGTTTTGATCACAATGACTCTCCAATGTTAACACCAAATTGGGATACTAATAATAACAACAATGCTGCTGGAAATGGAAGATCCAACTTTTCTACAATATCAAGAATGAATCTATCATCAGGGCTTCAAATCTTTGGAAAATCATGGGAAGAATGCAATAACAGTCCAAATAGATATTAG 1113 0.3684 MFPSTYCSLGSYPNYNPNSSSSSSSHSYPPFTYLTPDQQNASSINNTNNNINTFLHDPTISVPFTQTSHHHHHVPMNPETLTNWAIADYAAMLKQDLSASSHYNFSNLLAKKPVKKPAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKEAIEELTRSKNSIASGEDGVDDHSFSSSSSDGEEDEERKMKRAQKESSKMKDSREKARARARERTGEMKIQDLKEKYPETEHNQQQILHQLMPNDEENSKLVQRDDIFNFIEESIVIKRKLKKSSSHHHQQNSNLMPKEVSFDHNDSPMLTPNWDTNNNNNAAGNGRSNFSTISRMNLSSGLQIFGKSWEECNNSPNRY 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00676 370 Pfam TCP family transcription factor 118 240 IPR017887 -
Vivi6g00676 370 MobiDBLite consensus disorder prediction 18 45 - -
Vivi6g00676 370 ProSiteProfiles TCP domain profile. 119 177 IPR017887 -
Vivi6g00676 370 MobiDBLite consensus disorder prediction 184 238 - -
Vivi6g00676 370 Coils Coil 204 231 - -
Vivi6g00676 370 MobiDBLite consensus disorder prediction 198 238 - -
Vivi6g00676 370 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 76 334 IPR005333 GO:0003700
Vivi6g00676 370 ProSiteProfiles R domain profile. 222 239 IPR017888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00676 Vivi-Chr6 20572717 20574478 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00676 72 332 TCP Transcription Factor Family AT1G67260 36.486 1.40e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vivi6g00676 TCP 6.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00676 - - cam:101489716 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00676 6 20572717 20574478 Vivi1g01728 1 37413338 37414979 ECH
Vivi6g00676 6 20572717 20574478 Vivi6g00676 6 20572717 20574478 ECH