Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00670 ATGGCTTCAGTTACTCTTTCTCCAAATGCTTCCCCTGTTGTTGCTTTGCCTCCATCATCTAGTGTTGTTGTTTTGTCACCACCGCCACCATCGCCTCAGTCGAATCAAACATCGAATTCTCCTCCTCCTTTATCTCCTTCGGAGCCTACGGCTCTTCCTCCTTCTGATCCTTCAGTTCCTCCTCCTTCGCCTTCAGAGACAGTGCCTGATACTCCTCCTCCTTCGCCACCTGTATCTCCTCCTCCTCCTCCGTCTCCAACTCCACCCCTTTCTCCTCCACCATCAACTACACCGCCGCCAAGTTCTCCACCACCATCGCCACCAGCACCTGTTGTAACGTCACCACCTCCTGCACCAGTTGTAACATCACCACCTCCTGCACCAGTTGTAACATCACCACCTCCTGCACCAGCTACCGCTGCCCCTCCTCCCGATGAAACTTCACCTCCGCCTCCAAATTTGTCTCCACCACCTCCAGCGGCTGGTTCCCCTCCCCCTAAATCATCAAAGCCATCTCCACCACCTCCTTCTCCAGCTAATGTATCAAAGCCACCATCTGCCAATCCTCCTCCTGCACCACACGCAAAGCCACCAAAAAGTACGCCTTCACCTGATGCGCCTCCTCCATCAGTTTCTCAACCACCTCCTTCACATGATGCATCCCCTCCATCAGTTTCTCAACCACCTCCTTCACATGATGCATCCCCTCCATCTGTTTCTCCATCCCCTCCTTCCCCTTCAACTGTTCCACCTCCATCCACACCATCAACTCTAACTTCAGGACCTGCAGCAACTCCTACTAACGAAACAGTACATGGTGACAGTCCAATTGTGCCATTGCCATCTAGACCAAGTGTTGACGGTTCTGGTAATATAGCCACAAACAACACTCCTTCACATTCAGGAGGGTTAAATACCGGAGCTGCTGTTACTATTGGCGTTGTAGTTAGTTTAATTGTCCTCGGCCTTTTTGGTATCGCTGTGTGCTTTGTACAGAAAAAGAAAAAGGGAAAAGAATCCAGATCTGATTATGCTGCGCCTTCTCCATTTACCTCGTCTCACAATTCAGGTACCTTGTTCTTGAAGCCATACACTCCAGCCAATTTGAATGGGAGTGGCAATGGTAGTGAATATGTGTATTCACCACCGGAGCCAAGTGGAGTAAATAATTCAAGATCATGGTTAACATATGAAGAACTAATGCAAGCTACAAATGGGTTTTCAGAGCAGAATTTGTTGGGAGAAGGTGGATTTGGTTGTGTCTACAAAGGTTTGCTAGATGGAAGAGAAGTAGCTGTAAAACAGCTTAAAATTGGTGGTGGGCAAGGGGAACGTGAGTTCAGAGCAGAAGTTGAGACTATTAGTCGAGTACATCATCGTCATCTGGTTTCTTTGGTTGGTTACTGTATATCTGAGCATCAAAGATTGCTCGTCTACGACTTTGTTCCCAACGATACTCTTCATTATCATCTACATGATGAAAAAGCACCCGTTTTGAATTGGCCAATCAGAGTTAAGGTTGCTGCTGGTGCAGCCCGTGGAATAGCTTACCTACATGAAGACTGCCATCCACGCATTATTCATCGAGATATTAAGTCATCAAACATCCTTCTCGATCACAACTTTGAAGCTCTGGTTTCAGATTTTGGGCTTGCGAAATTAGCATTGGATTCAAACACACATGTAACTACACGTGTAATGGGAACATTTGGGTATATGGCACCAGAATATGCGACGAGTGGAAAATTGACTGATAAGTCTGATGTATATTCCTTTGGCGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTGTCGATGCTTCTCAGCCACTTGGTGATGAGAGCCTGGTTGAATGGGCTCGGCCTCTATTGATTGAAGCACTCGATACAGAGGACTTTGAAACTTTGGTGGATCCAAGACTGGAAAAGAACTACAACAGAAACGAAATGTTTAGAATGATTGAGGCTGCCGCAGCCTGCGTGCGTCACTCCTCAATTAAGAGGCCACGGATGAGTCAGGTTATGAGAGCTTTTGATTCCATGGCCGAGTTTTCTGATCTGAATAACGGAATGAAACCGGGGCAGAGTTCAGTGTTTGATTCTGCTCAACAATCTGCACAGATCAAAATGTTTAGGAGGATGGCTTTTGGAAGCCAAGATAGTTCCACTTTCTTCAATGAATCTCAAAGTAGCTATGGAAGTAGGAATCAGGACTCTACAACTATGCTCCCGCAAAATAAATCTCGGCCTTGGAACGTTCGAGACGACCCTTTATAG 2280 0.4675 MASVTLSPNASPVVALPPSSSVVVLSPPPPSPQSNQTSNSPPPLSPSEPTALPPSDPSVPPPSPSETVPDTPPPSPPVSPPPPPSPTPPLSPPPSTTPPPSSPPPSPPAPVVTSPPPAPVVTSPPPAPVVTSPPPAPATAAPPPDETSPPPPNLSPPPPAAGSPPPKSSKPSPPPPSPANVSKPPSANPPPAPHAKPPKSTPSPDAPPPSVSQPPPSHDASPPSVSQPPPSHDASPPSVSPSPPSPSTVPPPSTPSTLTSGPAATPTNETVHGDSPIVPLPSRPSVDGSGNIATNNTPSHSGGLNTGAAVTIGVVVSLIVLGLFGIAVCFVQKKKKGKESRSDYAAPSPFTSSHNSGTLFLKPYTPANLNGSGNGSEYVYSPPEPSGVNNSRSWLTYEELMQATNGFSEQNLLGEGGFGCVYKGLLDGREVAVKQLKIGGGQGEREFRAEVETISRVHHRHLVSLVGYCISEHQRLLVYDFVPNDTLHYHLHDEKAPVLNWPIRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDHNFEALVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTDKSDVYSFGVVLLELITGRKPVDASQPLGDESLVEWARPLLIEALDTEDFETLVDPRLEKNYNRNEMFRMIEAAAACVRHSSIKRPRMSQVMRAFDSMAEFSDLNNGMKPGQSSVFDSAQQSAQIKMFRRMAFGSQDSSTFFNESQSSYGSRNQDSTTMLPQNKSRPWNVRDDPL 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00670 759 ProSitePatterns Protein kinases ATP-binding region signature. 413 434 IPR017441 GO:0005524
Vivi6g00670 759 MobiDBLite consensus disorder prediction 287 303 - -
Vivi6g00670 759 MobiDBLite consensus disorder prediction 258 272 - -
Vivi6g00670 759 SMART serkin_6 407 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00670 759 CDD STKc_IRAK 413 677 - -
Vivi6g00670 759 MobiDBLite consensus disorder prediction 726 759 - -
Vivi6g00670 759 Gene3D Phosphorylase Kinase; domain 1 382 481 - -
Vivi6g00670 759 MobiDBLite consensus disorder prediction 726 749 - -
Vivi6g00670 759 MobiDBLite consensus disorder prediction 1 16 - -
Vivi6g00670 759 Pfam Protein tyrosine and serine/threonine kinase 410 677 IPR001245 GO:0004672|GO:0006468
Vivi6g00670 759 PRINTS Proline rich extensin signature 82 107 - -
Vivi6g00670 759 PRINTS Proline rich extensin signature 46 62 - -
Vivi6g00670 759 PRINTS Proline rich extensin signature 25 46 - -
Vivi6g00670 759 PRINTS Proline rich extensin signature 64 81 - -
Vivi6g00670 759 Gene3D Transferase(Phosphotransferase) domain 1 482 698 - -
Vivi6g00670 759 MobiDBLite consensus disorder prediction 22 257 - -
Vivi6g00670 759 ProSiteProfiles Protein kinase domain profile. 407 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00670 759 FunFam proline-rich receptor-like protein kinase PERK8 482 694 - -
Vivi6g00670 759 MobiDBLite consensus disorder prediction 1 303 - -
Vivi6g00670 759 SUPERFAMILY Protein kinase-like (PK-like) 384 677 IPR011009 -
Vivi6g00670 759 FunFam Proline-rich receptor-like protein kinase PERK8 380 481 - -
Vivi6g00670 759 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 319 727 IPR047117 -
Vivi6g00670 759 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00670 Vivi-Chr6 20416485 20420872 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00670 212 723 Trihelix Transcription Factor Family AT1G70460 52.514 1.74e-170 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vivi6g00670 PK_Tyr_Ser-Thr 5.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00670 - - gmx:100784873 787.334