Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00581 ATGTTGGAGCAAAAATTCCTCACCACCACCTCGGCCACCGTCCGGTCCGCGGTCTCGTGGCCGCGGACATGCGACACGTGCCGCTCGGCTCCATGCGCGGTATTCTGCCGCGCAGACTCGGCGTACTTATGCGCTGGATGCGACTCACGCATCCACGCAGCAAACCGTGTCGCCTCGAGGCACGAACGCGTCTGGGTCTGCGAGGCCTGCGAGCGTGCCCCGGCGGCTTTTCTTTGTAAAGCCGACGCCGCCTCTCTTTGCTCCTCGTGTGACGCTGATATTCACTCCGCTAACCCTCTCGCCAGCCGTCACCAGCGCGTCCCGATTCTTCCGATTTCGGGGTACCTTTACGGTCCTCCGACGACCCTTTTAGGCGCTGACGACGAAGGGTTTGTCCGCGGAGGCGGTGAGGCGGAGGAAGAGGAGGAGGAAGGTGTTGACATGGAAGATGAAAATGAAGCAGCTTCATGGCTTTTGTTGAATCCTATGAAAAACAACAATAACAATTTCAACAACAACATCAACAACAACAACATCAACAACAACAGCAGCAGCAACAACAACAGCAATGATCATAATCAAGACGTGAATAACGGGTTTTTGTTTAGCGGCGAAGTCGACGAGTATTTGGATCTTGTTGATTGTAACTCTTGTGGTGGTGGTGAAAACACTTTCACCACCAATAATTCTCATCATGATCATGAATATAGTCAACAGCAGCAACAACAACATCAACAAGATCATTATGGTGTTCCTCAAAAGAGCTATGTTGGAGATAGTGTTGTTCCTGTTCAACAGCAACATGTACAGAATTTTCAACTTGGGTTGGAGTTTGAATCTTCCAAAGCTGGATTCAGTTACAATGGTGGTGGTTCAATTAGTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGTGTTGTCCCAGAATCAACACTAAAAGATGCCACAACAATGTCTTATTCAAGACCTCCAAAAGGAACAATTGACCTATTTTCAGCTCCTCCTATTCAAATGACTTCTCATTTCTCTCCAATGGACAGAGAAGCAAGAGTCCTAAGGTACCTTGAGAAAAAGAAAACACGTAAATTCGAAAAAACAATCCGGTACGCCTCGAGGAAAGCCTACGCAGAAACTCGACCGCGTATCAAAGGTCGGTTCGCGAAACGGACCGACGTAGAAGCCGAAGTTGATCAAATGTTTTCCACAACCCTAATTACCGATGTTGGATACGGAATAGTCCCCTCTTACGTATAA 1254 0.4801 MLEQKFLTTTSATVRSAVSWPRTCDTCRSAPCAVFCRADSAYLCAGCDSRIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHQRVPILPISGYLYGPPTTLLGADDEGFVRGGGEAEEEEEEGVDMEDENEAASWLLLNPMKNNNNNFNNNINNNNINNNSSSNNNSNDHNQDVNNGFLFSGEVDEYLDLVDCNSCGGGENTFTTNNSHHDHEYSQQQQQQHQQDHYGVPQKSYVGDSVVPVQQQHVQNFQLGLEFESSKAGFSYNGGGSISQSVSVSSMDVGVVPESTLKDATTMSYSRPPKGTIDLFSAPPIQMTSHFSPMDREARVLRYLEKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITDVGYGIVPSYV 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00581 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 24 404 IPR045281 GO:0009909
Vivi6g00581 417 Pfam CCT motif 347 389 IPR010402 GO:0005515
Vivi6g00581 417 ProSiteProfiles Zinc finger B-box type profile. 24 66 IPR000315 GO:0008270
Vivi6g00581 417 MobiDBLite consensus disorder prediction 168 199 - -
Vivi6g00581 417 CDD Bbox1_BBX-like 24 66 - -
Vivi6g00581 417 ProSiteProfiles CCT domain profile. 347 389 IPR010402 GO:0005515
Vivi6g00581 417 SMART bboxneu5 67 109 IPR000315 GO:0008270
Vivi6g00581 417 SMART bboxneu5 19 66 IPR000315 GO:0008270
Vivi6g00581 417 MobiDBLite consensus disorder prediction 226 250 - -
Vivi6g00581 417 Pfam B-box zinc finger 64 109 IPR000315 GO:0008270
Vivi6g00581 417 CDD Bbox1_BBX-like 66 109 - -
Vivi6g00581 417 ProSiteProfiles Zinc finger B-box type profile. 62 109 IPR000315 GO:0008270
Vivi6g00581 417 MobiDBLite consensus disorder prediction 226 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00581 Vivi-Chr6 17582255 17585714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00581 19 416 C2C2-CO-like Transcription Factor Family AT3G02380 51.106 2.29e-125 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vivi6g00581 zf-B_box 1.8e-07 No_clan