Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00560 ATGCAAACAAAAGAATTTAACACACAACAACTCAATTATTTACTCCCAAATTCCAATCCATCCCCTTATCCATCATCATGCAACTACACCATCTTCCAAAACACACTCCAAACCTCTCATCTCTATGGTTTCAACCAAAACCCTATTCTTCAAGACTTCAGTCCTCAATCCTCATGCATAAGCAACAACTCAACCTCGGACGAAGCGGACGAGCAAAACAAAGGCCTAATCAACGAAAGAAAACATCGAAGAATGATATCGAACCGGGAGTCAGCGCGCCGATCCCGAATGAGGAAACAAAAACACCTTGATGAGCTTTGGTCACAAGTGGTTTGGTTAAGGAATGAGAATCATCAACTACTTGATAAGCTGAAGAGCTTTTCGGAGTCTCATGATAGAGTTGTTCAAGAGAATGTTCAATTGAAAGAACAAGCTTCGGAGCTTCGACAAATGGTTTGTGACATGCAGTTGCATGGTTCTTGTCTTCCTTTGAGTCCTCTTGAAGATGTTCCTAGCATGAACTCTCCTCATGTTGAATCTGATTCCTCAAACAAAACAATCACAAGTTCTGTTGATTTGTTAGGATTATAA 591 0.4044 MQTKEFNTQQLNYLLPNSNPSPYPSSCNYTIFQNTLQTSHLYGFNQNPILQDFSPQSSCISNNSTSDEADEQNKGLINERKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLLDKLKSFSESHDRVVQENVQLKEQASELRQMVCDMQLHGSCLPLSPLEDVPSMNSPHVESDSSNKTITSSVDLLGL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00560 196 FunFam BZIP transcription factor 78 129 - -
Vivi6g00560 196 MobiDBLite consensus disorder prediction 57 71 - -
Vivi6g00560 196 MobiDBLite consensus disorder prediction 57 76 - -
Vivi6g00560 196 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 83 98 IPR004827 GO:0003700|GO:0006355
Vivi6g00560 196 SMART brlzneu 76 140 IPR004827 GO:0003700|GO:0006355
Vivi6g00560 196 Coils Coil 131 151 - -
Vivi6g00560 196 Pfam bZIP transcription factor 80 130 IPR004827 GO:0003700|GO:0006355
Vivi6g00560 196 SUPERFAMILY Leucine zipper domain 80 129 IPR046347 GO:0003700|GO:0006355
Vivi6g00560 196 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 11 161 IPR044521 -
Vivi6g00560 196 Gene3D - 78 133 - -
Vivi6g00560 196 CDD bZIP_plant_GBF1 81 132 IPR045314 GO:0003700|GO:0006355
Vivi6g00560 196 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 78 141 IPR004827 GO:0003700|GO:0006355
Vivi6g00560 196 MobiDBLite consensus disorder prediction 175 196 - -
Vivi6g00560 196 MobiDBLite consensus disorder prediction 172 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00560 Vivi-Chr6 16162418 16163399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00560 12 162 bZIP Transcription Factor Family AT3G30530 62.025 1.63e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi6g00560 bZIP_1 8e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00560 - - aprc:113863596 252.292