Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00546 ATGCAAACAAAAGAATTTAACACACAACAACTCAATTATTTACTCCCAAATTCCAATCCATCCCCTTATCCATCATCATGCAACTACACCATCTTCCAAAACACAACTCAAACCTCTCATCTCTATGGTTTCAACCAAAACCCTATTCTTCAAGACTTCAGTCCTCAATCCTCATGCATAAGCAACAACTCAACCTCGGACGAAGCGGACGAGCAAAACAAAGGCCTAATCAACGAAAGAAAGCATCGAAGAATGATATCGAACCGGGAGTCAGCGCGCCGATCCCGAATGAGGAAACAAAAACACCTTGATGAGCTTTGGTCACAAGTTGTTTGGCTAAGGAATGAGAATCATCAACTACTAGATAAGTTAAAAAGTTTTTCAGAATCTCATGATAGAGTTGTTCAAGAGAATGTTCAATTGAAAGAACAAGCTTCGGAGCTTCGACAAATGGTTTGTGACATGCAGTTGCATGGTTCTTGTCTTCCTTTGAGTCCTCTTGAAGATGTTCCTAGCATGAACTCACCTCTTGTTGAATCTGATTCCTCAAACAAAACAATCACAAGTTCTGTTGATTTGTTAGGATTATAA 591 0.3942 MQTKEFNTQQLNYLLPNSNPSPYPSSCNYTIFQNTTQTSHLYGFNQNPILQDFSPQSSCISNNSTSDEADEQNKGLINERKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLLDKLKSFSESHDRVVQENVQLKEQASELRQMVCDMQLHGSCLPLSPLEDVPSMNSPLVESDSSNKTITSSVDLLGL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00546 196 FunFam BZIP transcription factor 78 129 - -
Vivi6g00546 196 SMART brlzneu 76 140 IPR004827 GO:0003700|GO:0006355
Vivi6g00546 196 Coils Coil 131 151 - -
Vivi6g00546 196 Pfam bZIP transcription factor 80 130 IPR004827 GO:0003700|GO:0006355
Vivi6g00546 196 SUPERFAMILY Leucine zipper domain 80 129 IPR046347 GO:0003700|GO:0006355
Vivi6g00546 196 Gene3D - 78 133 - -
Vivi6g00546 196 CDD bZIP_plant_GBF1 81 132 IPR045314 GO:0003700|GO:0006355
Vivi6g00546 196 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 11 161 IPR044521 -
Vivi6g00546 196 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 83 98 IPR004827 GO:0003700|GO:0006355
Vivi6g00546 196 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 78 141 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00546 Vivi-Chr6 15363858 15364901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00546 12 162 bZIP Transcription Factor Family AT3G30530 62.025 7.67e-52 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi6g00546 bZIP_1 8e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00546 - - aprc:113863596 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00546 6 15363858 15364901 Vivi6g00546 6 15363858 15364901 ECH
Vivi2g04843 2 168049369 168050205 Vivi6g00546 6 15363858 15364901 PCT