Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00542 ATGACAATTGGGAATCTTGCACCTAAGACAGAGAGGAAGAAATCAAGAAAGAACAAGGCAATTGTGAATGAGAATGCACCCTTGTTGCCAAAAAGTCAAGCCAATGAGAGTGATTCCGGGTTCGATGATTTTAATGGAGCTTCGTATTCTGGCGCTGTTTTCAACTTGGCAACAACAATTATCGGTGCCGGAATCATGGCTTTGCCCGCGACTGTGAAACAGTTAGGAATGATTCCGGGTCTTCTTGGTATACTGATGATGGCTTTTTTGACTGAGAAGTCGATTGAGCTTTTGATTAGGTTTACAAGAGCAGGGAAGTCTGTTTCATATGCTGGTTTGATGGGCGATTCTTTTGGGAAATATGGAAAAGCTTTGATGCAGATTTCTGTTATCGTCAACAACGTTGGCACGCTTATTGTTTACATGATTATAATTGGTGATGTGCTATCTGGAACATCATCTTCAAGTGCAGAACATCACTACGGTATCCTTGAAGGATGGTTTGGTGTGCATTGGTGGACTGGACGTACGTTTATTGTCCTTCTTACGACGGTTACTATATTTGCTCCCCTCGCATGCTTTAAGCGAATTGATTCGTTGAGATTTACATCAGCGCTTTCCGTTGCACTTGCGGCTGTTTTTCTTGTCATTGCCGTGGGAATTTCTGTTGTCAAGATAATAAGTGGAGGCATTAGCATGCCGAGACTCTTCCCTATTGTTACCGACGCAACATCTATCGTTGACCTATTCACCGTGGTTCCCGTGTTTGTAACTGCCTATATCTGTCACTACAATGTTCACAGCATAGATAATGAACTCGAGGACAACTCACAGATGCAAAGCGTTGTACGTACGGCCCTTGGTCTATGCTCATCCGTGTACATGATGATAAGTTTCTTCGGTTTCCTTCTATTCGGTGAAGGAACCCTTGATGACGTGCTTGCCAACTTCGATACCGATCTCGGAATTCCTTTCGGTTCTCTGCTCAACGACGCTGTTCGTATTAGCTACGCCGCACACCTCATGTTTGTATTTCCAGTTGTGTTTTTTCCGTTGCGACTCAATATAGACGGTCTTCTCTTCCCTTCGTCAAGACCTTTGGTTCTCGATAACTTCAGATTCGCCTCAATCACTGCTTCCCTTATCGGTGTAATCTTCCTTGGAGCAAACTTCATACCTAGCATTTGGGATGCTTTCCAGTTCACCGGAGCAACCGCCGCAGTCTGTATAGGATTCATCTTTCCAGCTGCGATTACTCTCAAGGACCGCTACAACATAGCGACAAGATCAGACAAGATTCTATGCGTCGTTATGATAGTCCTCGCTGTGGCCTCAAATGTTGTGGCTATATACAGCAACGCATTTGGATTGATCACGAAGAGCAAGACTTCGCGCGAATGA 1401 0.444 MTIGNLAPKTERKKSRKNKAIVNENAPLLPKSQANESDSGFDDFNGASYSGAVFNLATTIIGAGIMALPATVKQLGMIPGLLGILMMAFLTEKSIELLIRFTRAGKSVSYAGLMGDSFGKYGKALMQISVIVNNVGTLIVYMIIIGDVLSGTSSSSAEHHYGILEGWFGVHWWTGRTFIVLLTTVTIFAPLACFKRIDSLRFTSALSVALAAVFLVIAVGISVVKIISGGISMPRLFPIVTDATSIVDLFTVVPVFVTAYICHYNVHSIDNELEDNSQMQSVVRTALGLCSSVYMMISFFGFLLFGEGTLDDVLANFDTDLGIPFGSLLNDAVRISYAAHLMFVFPVVFFPLRLNIDGLLFPSSRPLVLDNFRFASITASLIGVIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAITLKDRYNIATRSDKILCVVMIVLAVASNVVAIYSNAFGLITKSKTSRE 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00542 466 MobiDBLite consensus disorder prediction 1 37 - -
Vivi6g00542 466 PANTHER AMINO ACID TRANSPORTER 42 445 - -
Vivi6g00542 466 Pfam Transmembrane amino acid transporter protein 48 451 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00542 Vivi-Chr6 15173777 15177342 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00542 3 466 Amino Acid or Auxin Permease AAAP Family AT3G30390 67.457 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00542 K14207 - gmx:100796345 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00542 6 15173777 15177342 Vivi6g00542 6 15173777 15177342 ECH
Vivi2g04839 2 167844123 167847210 Vivi6g00542 6 15173777 15177342 PCT