Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00490 ATGCTTGGAAATTACTCAAAGCATAAAAGTTCATCCAAGAAAAAATATCCTGCATTTATAGAAGAACTATGCCGTCAATTTTCCCTGGAAGATGTTAGGAAATCGACCAATAACTTTGACGAAGAACGAATAATCGGGGGAACAGAATTCAGTATAGTGTACAAAGGTTACCTCAACCATAACGGCGAAACTGATTATCCAATAGCATTGAAGGGGATGAGAAATATAGTCTTCGATGAATGGAAGTTCAAGAAGGAAATTGAACTCAACTGCCAACTTCGTCATCCGAATTTGACATCCTTTATAGGTTTCTGTGATCATAAGGACGAGAGAATTCTCGTGTATGAATACATGTTGAATGGATCTGTCTATGATCACTTGCGTTTAAGGGATAATGAATCACTCTCATGGAAGAAAAGATTTGAAATTTGCATTGGAGCTGCAAAAGGACTACACTACCTTCACACTGGAGCTAAACGCGCGATTTTTCACTGTGATATAAAGCCTCAAAACATTCTCTTAGATAAAAGTATGGTACCAAAACTTTCACATCTTGGATTTTCCATACAAGAGAAGGTTTCTAAATCGAAGCCTAAACCAGTTAAAGCCGAGATCCTTATTTTTGGTGCATTTGGTTACACGGCGCCCGAGTGTGTCCGAACTAATGCTTTCACGGAAAAATGTGATGTTTATTCCTTTGGTAGCTTCTTGGAAAGGTTCCCAGCTGATGAGATTATTGATCCTATTCTTATGAGATCGATTGCACCGCGCTGTTTGGAAGTGTTTGTGGATATCATGCAGAGATGCTTGAAGTATGACCCAAATGAAAGACCAACAATGGGTGAGGTTGAGGTTGAACTTGAGCATGCTCTGGCACTGCATGAGGAAGCAGATTGTTGTAGATAG 906 0.394 MLGNYSKHKSSSKKKYPAFIEELCRQFSLEDVRKSTNNFDEERIIGGTEFSIVYKGYLNHNGETDYPIALKGMRNIVFDEWKFKKEIELNCQLRHPNLTSFIGFCDHKDERILVYEYMLNGSVYDHLRLRDNESLSWKKRFEICIGAAKGLHYLHTGAKRAIFHCDIKPQNILLDKSMVPKLSHLGFSIQEKVSKSKPKPVKAEILIFGAFGYTAPECVRTNAFTEKCDVYSFGSFLERFPADEIIDPILMRSIAPRCLEVFVDIMQRCLKYDPNERPTMGEVEVELEHALALHEEADCCR 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00490 301 SMART serkin_6 39 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00490 301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Vivi6g00490 301 Gene3D Transferase(Phosphotransferase) domain 1 118 299 - -
Vivi6g00490 301 SUPERFAMILY Protein kinase-like (PK-like) 15 290 IPR011009 -
Vivi6g00490 301 Gene3D Phosphorylase Kinase; domain 1 2 117 - -
Vivi6g00490 301 PANTHER OS07G0166700 PROTEIN 242 294 IPR045272 GO:0004714|GO:0006468
Vivi6g00490 301 ProSiteProfiles Protein kinase domain profile. 39 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00490 301 Pfam Protein kinase domain 40 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00490 301 FunFam Receptor-like protein kinase ANXUR2 5 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00490 Vivi-Chr6 12734953 12736580 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00490 8 297 Receptor kinase-like Gene Family AT5G39000 39.692 1.53e-62 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vivi6g00490 Pkinase 1.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00490 - - mtr:25497582 386.726