Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00483 ATGGCGCATTCTTTCGGTCAAGCCGAAATTAATTGGGACAAGCTAGATAAGACTAAGTTCTATGTGGTAGGAGCTGGACTCTTTACCGGTGTTACAGTAGCACTTTATCCGGTTTCAGTTGTGAAAACTAGGCTGCAGGTTGCAACTAAGGGGGCTGTAGAGAAAAATGCCTTTTCTGTTGCAAAAGGATTACTTAAAACAGATGGAATTCCTGGTCTGTATAAAGGATTTGGTACGGTTATCACTGGTGCAATACCGGCCAGAATCATATTCATGTCGGTTCTAGAGACCACAAAGGTGTATGCCTTCAAAATGGTGAAACCATTTGGACTATCTGAAACTACTCAGGCTGCCTTAGCAAATGGATTTGCAGGCATGACATCATCACTTTTTGCTCAATCTGTGTTTGTACCAATTGATGTGGTTAGCCAAAAATTGATGGTGCAAGGATACTCAGGCCATGCCCAATATAGTGGGGGTCTGGATGTTGCTCGTAAGATTATAAGGTCTAATGGCATTAAGGGATTGTATCGAGGGTTTGGCCTTTCTGTTGTTACTTATGCACCTTCTAGCGCAGTTTGGTGGGCAAGTTATGGTTCAAGCCAACGGTTCATTTGGAGATTTTTGGACCAAGGTGCCAAACATGATGAAGGCACTCCCAGTGTGCTGAAGATTGTATCAGTTCAGGCTGCGGGAGGGATTATTGCCGGTGCAACTGCTTCCTGCATAACAACGCCATTTGATACTATCAAGACACGGTTACAGGTGATGGGACATGAAAATAAAAGCTCTATAAAAAAAGTTACTAAAGATTTAATCAAACAAGATGGTTGGAAAGGCCTATATAGAGGGTTTGGTCCAAGATTTTTTAGCATGTCAGCGTGGGGCACGTCAATGATATTGACTTACGAATATCTGAAACGATTATGCGCAATAGAAGAATAG 945 0.4233 MAHSFGQAEINWDKLDKTKFYVVGAGLFTGVTVALYPVSVVKTRLQVATKGAVEKNAFSVAKGLLKTDGIPGLYKGFGTVITGAIPARIIFMSVLETTKVYAFKMVKPFGLSETTQAALANGFAGMTSSLFAQSVFVPIDVVSQKLMVQGYSGHAQYSGGLDVARKIIRSNGIKGLYRGFGLSVVTYAPSSAVWWASYGSSQRFIWRFLDQGAKHDEGTPSVLKIVSVQAAGGIIAGATASCITTPFDTIKTRLQVMGHENKSSIKKVTKDLIKQDGWKGLYRGFGPRFFSMSAWGTSMILTYEYLKRLCAIEE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00483 314 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Vivi6g00483 314 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Vivi6g00483 314 PRINTS Mitochondrial carrier protein signature 233 255 IPR002067 GO:0055085
Vivi6g00483 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
Vivi6g00483 314 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 3 311 - -
Vivi6g00483 314 SUPERFAMILY Mitochondrial carrier 13 306 IPR023395 -
Vivi6g00483 314 Pfam Mitochondrial carrier protein 25 104 IPR018108 -
Vivi6g00483 314 Pfam Mitochondrial carrier protein 229 310 IPR018108 -
Vivi6g00483 314 Pfam Mitochondrial carrier protein 118 205 IPR018108 -
Vivi6g00483 314 FunFam Mitochondrial substrate carrier family protein 21 313 - -
Vivi6g00483 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 309 IPR018108 -
Vivi6g00483 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 17 101 IPR018108 -
Vivi6g00483 314 Gene3D Mitochondrial carrier domain 20 313 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00483 Vivi-Chr6 12541789 12549278 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00483 10 314 Chloroplast and Mitochondria Gene Families AT5G15640 76.221 2.52e-171 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00483 K15121 - gmx:100781796 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00483 6 12541789 12549278 Vivi6g00483 6 12541789 12549278 ECH