Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00480 ATGCTTGGAAATTACTCAAAGCATAAAAGTTCATCCAAGAAAAAATATCCTGCATTTATAGAAGAGCTATGCCGTCAATTTTCGCTGGAAGATGTTAGGAGATCAACCAATAACTTCGACGAAGAACGAATAATTGGAGGAACAGAATTCAATATAGTGTACAAAGGCTATCTCAACCATAACGGCGAAACTGACTATCCAATAGCATTGAAGCGGATGAGAAATATTGTCTTCGATGAATGGAAGTTCAAGAAAGAAGTTGAACTCAACTGCCAGCTTCGTCATCCGAATTTGACATCCTTTATAGGTTTCTGTGATCAAAAGGATGAGAGAATTCTCGTGTATGAATACATGTTGAATGGATCTGTCTATGATCACTTGCGTTTAAGGAATAATGAATCACTCTCATGGAAGAAAAGACTTGAAATATGCATCGGAGCTGCAAAAGGACTACACTACCTTCATTCTGGAGCAAAGCGCGCGATTTTTCACTGTGACATAAAGCCTCAAAACATTCTCTTAGACAAGGGTATGGTAGCAAAGCTCTCCCATCTTGGATTTTCCATCCAAGAGAAGGTCTCTAAATCAAAATATAAACCAATTAAAGCTAGCACCCTAATTTATGGTACATTTGGTTACACGGCGCCAGAGTGTGTCCGAACCAATGTTTTCACCGAAAAATGCGATGTATATTCCTTTGGTATGGTTCTACTTGAAGTAGCATGCACAAACTACAAGAGTAGCATCTTTGATAAGATGGTAAAGTTAGAGAACACGAACCGGTTCTTAGATGAGTCGATTAATGCAGGTAGCTTCTTGGAAAGGTTCTCAGCTGATGAGATTATTGATCCTATTCTTATGAGATCGATTGCACCTCGCTGTTTGGAAGTGTTTGTGGATATCATGCAGAGATGCTTGAAGTATGACCCAAATGAAAGACCATCAATGGGCGAGGTTGAGGTTGAACTTGAGCATGCTCTGGCATTGCATGAGGAAGCAGATTGTTGTAGATAG 1014 0.3955 MLGNYSKHKSSSKKKYPAFIEELCRQFSLEDVRRSTNNFDEERIIGGTEFNIVYKGYLNHNGETDYPIALKRMRNIVFDEWKFKKEVELNCQLRHPNLTSFIGFCDQKDERILVYEYMLNGSVYDHLRLRNNESLSWKKRLEICIGAAKGLHYLHSGAKRAIFHCDIKPQNILLDKGMVAKLSHLGFSIQEKVSKSKYKPIKASTLIYGTFGYTAPECVRTNVFTEKCDVYSFGMVLLEVACTNYKSSIFDKMVKLENTNRFLDESINAGSFLERFSADEIIDPILMRSIAPRCLEVFVDIMQRCLKYDPNERPSMGEVEVELEHALALHEEADCCR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00480 337 Gene3D Transferase(Phosphotransferase) domain 1 118 335 - -
Vivi6g00480 337 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Vivi6g00480 337 PANTHER OS07G0166700 PROTEIN 23 330 IPR045272 GO:0004714|GO:0006468
Vivi6g00480 337 SMART serkin_6 39 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00480 337 FunFam Receptor-like protein kinase ANXUR2 5 117 - -
Vivi6g00480 337 ProSiteProfiles Protein kinase domain profile. 39 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00480 337 Pfam Protein tyrosine and serine/threonine kinase 42 321 IPR001245 GO:0004672|GO:0006468
Vivi6g00480 337 Gene3D Phosphorylase Kinase; domain 1 2 117 - -
Vivi6g00480 337 SUPERFAMILY Protein kinase-like (PK-like) 15 326 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00480 Vivi-Chr6 12446512 12448322 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00480 10 333 Receptor kinase-like Gene Family AT5G38990 42.424 7.67e-71 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vivi6g00480 PK_Tyr_Ser-Thr 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00480 - - mtr:25497582 444.506