Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00476 ATGTCAAACTCCACCAACAACATATTTCACACTAAAATAACCCTACTATATCTCTTTTTGCTATTTTCACCTCTACTTGCTTACTCATACAACCCTGATTACAACTATGCAATCAATTGTGGCAATCCTGCAGATACTAAAGCCTCAGACAATCGAAATTGGCTTGGTGATAATATTCATAACTCCAATATATTTTCCTTCATTGAACCAAATTCCACAAACCCATCTTTTACATCACAACCTAATTCTCTCTCAAATATCCAAACTCCATTCTTAACCGCACGTGTCTCTTTCTCAAATTTCACATACTCATTTTCTAGCATCAATACTTCTCCTGTTTTTATTCGCCTTCATTTTTACCCAACTTCTTATCAAAACTTTGAACCCTCCAATGCAAATTTTTCTGTCAAAGTAAATAACAACCTTACCCTTCTTAACAACTTCAACCCTTTACTTTGGCTTCATCATGATGATGAGGAAAAAATCACCAAAGAATATTGCATCCAAACCAAACCAAATGAGAAGCTAGACATAACTTTCGTTCCAAGTAACATAAACCAATCAAATGTTTATTATGCTTTTGTTAACGGGATCGAACTTGTGTCTATGCCTTCTTTTCTCTATTACACTGATCTCGATGACATGAACTACCATATCAAGTTTCTTGGCTTTGACGACAGTGCTAGCGAATACCAAATTCGCAAGGACAAAGCTTTTGAGACTGTTTATAGAGTCAATATTGGTGATAATCAAGTTCCACCAAATGAAGATACCGGTATGTTTCGTAATTGGGACAACGATTTTCCTCGTTACTTGGAGAAACAGCTTCCACAAAGTGAACCAGTTGATTGGGGACATCATCTCAACTTTAAAAACAATACCATTCCAAATTACACTGCACCTGAAGCAGTATACTTGACTGCAAGAAGTTATGGGAACTATGAAACAGAGAATTATAATGTAACTTGGAATTTTGAAGTTGATTCTGCTTTTACTTATATGGTAAGGCTGCACTTTTGTATGTTTGATTTGACCATAAAAAATGAACTTGGTATGGTCTTTCAGATTTTCATAGCTGATAATTTAGCTGAGAAAAGAGCTGATGTGATTGCGTGGAGTGGTGGTAATGAGATTCCTGTTCATAAGGATTATGCTGTGCCAATGTACTCTCTAGAAGGAAGCTCTCAAATTGAAAGAGTTAACCTTTCAATCAAGCTACAACGCGCACCAGAAACTTTCTTCACACTATACCGTGATGTCTTCCTGAATGGAATTGAGATTTTCAAGATAAATGATAAAAGTAACAATCTGGCAGGATTGAATCCGAATTATTCATCTCCAAATGGGAAAGTATTACCAACTCCAAAACCAAACTCAAAGAAGTCATCAATATTCATGGTTGTTGTGGTTGGAGTTTCATGTCTCTTGCTAGCATTTGTTGTTGTGGGAATAATAGTTTTTGTAAGAAGGAGAAGAAGTTTTGAGTCTAATTTTGAAATGGAAGAAAGTTTATGGAAGAAAAAGAGTGAAGGTTCCTCAACTTTACCATCCCATTTGTGTCGCTATTTTACAATAGCGGAGATAAGAACGGCTACAAACAACTTCGACGATATTTTTATCATCGGAGTTGGAGGATTTGGAAATGTGTACAAGGGTTACATCGATGGGGTTACACCTGTTGCAATAAAACGACTGAAGTCAGGTTCTCAACAAGGTGTAGACGAGTTTCTGAATGAGATCGAGTTGCTCTCTGAGCTTCGTCATATTCACCTGGTTTCTCTTATTGGATATTGCAATGATGGTATAGAGATGATTCTTGTTTACGAGTTCATGCAACGCGGAACTCTTTGTGAATATCTCTATGGTTCGGATAATGAACCTCTTACATGGAAACAAAGACTTGAGATTCTATTGGGTGCTGCGAGGGGGTTGAATTATCTTCATGAAGGCGCAAAGTACAATATCATACATCGTGATGTGAAAAGTACGAACATATTGTTGGATGAGAAATGGGTGGCTAAAGTTTCTGATTTTGGGCTATCAAAAGTGGGACCCACGGGAATTTTGATGACTCACGTCACCACTGTGGTAAAGGGTAGTCTCGGGTATTTAGATCCTGAATACTACTTACGCCAAAGGTTAACTCTAAAGTCTGACGTGTACTCGTTCGGTGTGGTGCTTCTTGAGGTGTTGTGCGGGAGACCTCCTTTAATGCGTTGTTTAGATAAGCAAAACTCGAGTTTGGTTGTTTGTTTTCAAAGATGTTACAATGAAGGTGTGATAATTGAACGGTTGGTGGACCCATTCATAAAGGATTCTATAACAGATGAGTCTTTGAAATGTTATTGTCAAATGGCTTTGAATTGTTTGCATGATGATGGGAATCAAAGAATGTCCATGAGTGATGTTGTTGGAGGGCTAGAGTTAGTTTTGATGTTGGAGATGAGTGAGGAGGATGGTAAGTTTGGAAGGACCCAAGAAAAGAAAAAGAGTGAAAAAAGGATACAATCTCTAAAGTTTACCAATGATGATGGAAATGACATGAGTTTAATGAGTATATGTGGTGGAGATTATGGGTCTCATACTAGCAAGACAAGCACCATTTCCATCATAAGTGAAGACCAACCTTTGTTTTCAGCTAATGTGTTTTCTGAAATTGGAAATCAATAA 2670 0.373 MSNSTNNIFHTKITLLYLFLLFSPLLAYSYNPDYNYAINCGNPADTKASDNRNWLGDNIHNSNIFSFIEPNSTNPSFTSQPNSLSNIQTPFLTARVSFSNFTYSFSSINTSPVFIRLHFYPTSYQNFEPSNANFSVKVNNNLTLLNNFNPLLWLHHDDEEKITKEYCIQTKPNEKLDITFVPSNINQSNVYYAFVNGIELVSMPSFLYYTDLDDMNYHIKFLGFDDSASEYQIRKDKAFETVYRVNIGDNQVPPNEDTGMFRNWDNDFPRYLEKQLPQSEPVDWGHHLNFKNNTIPNYTAPEAVYLTARSYGNYETENYNVTWNFEVDSAFTYMVRLHFCMFDLTIKNELGMVFQIFIADNLAEKRADVIAWSGGNEIPVHKDYAVPMYSLEGSSQIERVNLSIKLQRAPETFFTLYRDVFLNGIEIFKINDKSNNLAGLNPNYSSPNGKVLPTPKPNSKKSSIFMVVVVGVSCLLLAFVVVGIIVFVRRRRSFESNFEMEESLWKKKSEGSSTLPSHLCRYFTIAEIRTATNNFDDIFIIGVGGFGNVYKGYIDGVTPVAIKRLKSGSQQGVDEFLNEIELLSELRHIHLVSLIGYCNDGIEMILVYEFMQRGTLCEYLYGSDNEPLTWKQRLEILLGAARGLNYLHEGAKYNIIHRDVKSTNILLDEKWVAKVSDFGLSKVGPTGILMTHVTTVVKGSLGYLDPEYYLRQRLTLKSDVYSFGVVLLEVLCGRPPLMRCLDKQNSSLVVCFQRCYNEGVIIERLVDPFIKDSITDESLKCYCQMALNCLHDDGNQRMSMSDVVGGLELVLMLEMSEEDGKFGRTQEKKKSEKRIQSLKFTNDDGNDMSLMSICGGDYGSHTSKTSTISIISEDQPLFSANVFSEIGNQ 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00476 889 Gene3D - 237 430 - -
Vivi6g00476 889 Gene3D - 31 204 - -
Vivi6g00476 889 FunFam FERONIA receptor-like kinase 237 431 - -
Vivi6g00476 889 FunFam FERONIA receptor-like kinase 35 204 - -
Vivi6g00476 889 FunFam Receptor-like protein kinase FERONIA 611 831 - -
Vivi6g00476 889 SUPERFAMILY Protein kinase-like (PK-like) 511 807 IPR011009 -
Vivi6g00476 889 Gene3D Phosphorylase Kinase; domain 1 495 610 - -
Vivi6g00476 889 ProSiteProfiles Protein kinase domain profile. 535 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00476 889 Pfam Malectin-like domain 38 430 IPR024788 -
Vivi6g00476 889 SMART serkin_6 535 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00476 889 PANTHER OS03G0124300 PROTEIN-RELATED 15 508 IPR046957 GO:0004672
Vivi6g00476 889 Gene3D Transferase(Phosphotransferase) domain 1 611 833 - -
Vivi6g00476 889 ProSitePatterns Protein kinases ATP-binding region signature. 541 563 IPR017441 GO:0005524
Vivi6g00476 889 Pfam Protein tyrosine and serine/threonine kinase 541 752 IPR001245 GO:0004672|GO:0006468
Vivi6g00476 889 FunFam receptor-like protein kinase FERONIA 498 610 - -
Vivi6g00476 889 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672|GO:0006468
Vivi6g00476 889 CDD STKc_IRAK 541 804 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00476 Vivi-Chr6 12414258 12417225 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00476 27 888 Receptor kinase-like Gene Family AT3G51550 42.586 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vivi6g00476 Malectin_like 5.5e-33 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00476 - - mtr:25497555 1007.67