Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00446 ATGAGTAATAATTCAAAGGAAGTTGAGTTTCCATTGAAACAAGAGATTCACCAAAACTCAAATGATCAACAAGAGAAAGAAAAGGCATCATCGTCATCGTTAAACTCGTTATCTTCGTCGCAATGGCCGAGATTGAAAGATCCAAGAATTGTTAGAGTCTCAAGAGCCTTTGGTGGAAAAGATAGACATAGCAAAGTTTGCACAATAAGAGGATTAAGAGATAGAAGAATAAGACTTTCAGTTCCAACAGCTATTCAACTTTATGATCTTCAAGATAGGTTAGGGCTTAATCAACCTAGTAAAGTTGTTGATTGGTTACTTAATATTGCTAAACATGAGATTGATCAACTTCCACCTTTACCTAATTTTCCACCTCTAGGAGCAAATTTCAACTTTGGTTTTCCTTTTCCGTCTAACGAATCGATCACAATCGCCAACACCGACTCCAACACTTCTCAAACTCATCAACAATTGTTGAATTTCAATAGAAACAATAACATTCATTGGGACGGTTCGTCTTCGAGCCATGAATCGAAAGAGGTTTCGAGAGAAATGGTTATGGAAAAAGGGAATTATTGGATGAATAATAGAAGTACTACTACTCAAGAAGAGGTGAATGTTAACACAAAACAAGGTAGTAACAATGATGAAGTTCCTAGTGCAATTGTTTTACCTAATAGTAACAATTTGTTGCAAAGACCAAATCACCCTTCATTTCTTGGTTTGTTGAATACTATGCCATTTGGTTCTAGTTACAATTGGGGAGTTTCTTCAAATGATCATCATGGTTTTGCAAATCAAGAAGATGTTAATGCAATTTCATCTTTGCCACCAATGTTGTCTTTGTCAACTGGAAATTCTTCTCAAATGTTGTTTGGAACATCACAATCATATTTTTCTTCAAATGTTAATGCAATGGAGATGGAACATCATCAACATCATCATCAACAACAACATCAACAACATCAAAGACAAATCAACAATCATTATAATCAAATGTTGAGTTCGTCGAGTTCGCAAAATCCGTTGAATAATTCTCTCAACAATCCATCTTTCAGTTTGGCAAAATTTCTACAAAGTTCATCAAATAAAGAGCAAGGTTTCTCTCCAAAGTGA 1116 0.3486 MSNNSKEVEFPLKQEIHQNSNDQQEKEKASSSSLNSLSSSQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNIAKHEIDQLPPLPNFPPLGANFNFGFPFPSNESITIANTDSNTSQTHQQLLNFNRNNNIHWDGSSSSHESKEVSREMVMEKGNYWMNNRSTTTQEEVNVNTKQGSNNDEVPSAIVLPNSNNLLQRPNHPSFLGLLNTMPFGSSYNWGVSSNDHHGFANQEDVNAISSLPPMLSLSTGNSSQMLFGTSQSYFSSNVNAMEMEHHQHHHQQQHQQHQRQINNHYNQMLSSSSSQNPLNNSLNNPSFSLAKFLQSSSNKEQGFSPK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00446 371 MobiDBLite consensus disorder prediction 1 18 - -
Vivi6g00446 371 Pfam TCP family transcription factor 59 185 IPR017887 -
Vivi6g00446 371 MobiDBLite consensus disorder prediction 25 41 - -
Vivi6g00446 371 ProSiteProfiles TCP domain profile. 59 117 IPR017887 -
Vivi6g00446 371 MobiDBLite consensus disorder prediction 1 41 - -
Vivi6g00446 371 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 23 341 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00446 Vivi-Chr6 11672965 11675179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00446 22 131 TCP Transcription Factor Family AT3G02150 63.866 2.75e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vivi6g00446 TCP 6.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00446 - - var:108327895 302.753