Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00439 ATGGCTTCCAACAAAAACAACATTAAAATCCATGAACACATCAAAGTTGTTCCTCCATCATCATCTACCCAAACAACAACAACAACTCCTCTCACTTTCTTCGACATAATTTGGCTAAGGTTTCATCCTGCAGAGCGAATCTATTTTTACACACTCCATGATCCACACTCTCACCCTTCTTTTTTCTTTCAAGAAATTGTTCCAAATCTCAAATCTTCACTCTCTTTAACCCTCCAACATTTTCTCCCGTTAGCTGGTAAAATCGTTTGGCCTTCTGATTCTTCAAAACCATTCATTCAATTCGATCCGAGTGATGATGATATTGGAGTTTCATTACACATTGTAGAATCTGATGCCGATTTCAATCATGTCATCGGAAACTCACCCCATGAAGCTTCTTTGTCTCGTTCTTTTATACCTCACTTGGAATCATCAGATTCGTTTTTTGCGTCTATCATTTCACTCCAGATCACTTTTTTCCCAAATTGTGGTTTCAGCATAGGAATCACTGCACACCATGGTGTTTTTGACGGAAAATCTTTATCCATGTTCATTAAAGCTTGGGCTTATCTATGCAACAAAATAATTGGACTTGAAACACCAACTTTGTTGCCAGAGTTAGAGCCTTTATTCAACACAGATATCATCATAGGCACAAATGAAAATAACTTAATCAAGATCTTATCCAAGATATTCCCAAGTGAAAAAGGAAATGAAAGAAGCCTAAAGATTTTTCCTTATGAACCAAAACTCGAAGACTCTCTTCGTGCTACGTTCAAGCTCACACGTGCAGATTTGGATAAAATCAAGCAAGATGTGCTATCCAAATGGGAAATATTCAATCCAAATGAATCAAAGCCACAAACTTTATCATCATTTACTCTCACTTGTGCTCATTCACTTGTTTGTATAGCAAAATCTATTCATGAAGTTGAACAAGAGAAAGAAAAGTTTGCTTTTGCTTTTGCAATAGATTGTAGAGCAAGGTTGGAAACTCCATTACCAAATAACTATTTTGGTAACTGTGTATTGGCTAGTTTCATTAATACACAACCAATTGATTTCATAAACGAAGATGGTGTCTTTGTAGTTGCGAAGTGTATTTATGAGAAAATAAAGATGATAAATAAAAAGGGAATTTTTGAAGAAAGTATTTTTGATTTGTTTGATAAATATAGAACTTTAAATAATGAAGGATATGAAACTTTTGGTGTTGCTGGGTCTAATAAACTAGGTGCTTATAAGAATAATTTTGGTTATGGAAGGCCAGAAAAGGTGGAGTTAGTGTCCATAGATAAAGATTTATCAATTGGTTTTGGAGATAGCGGTGATGGTGATGGTGAAGTTGAAATTGGTCTTGTTTTAAATAAACATGTAATGAATACCTTTAGCACTTTGTTTCTTGAAGGACTATGTGTTAATTGA 1425 0.3467 MASNKNNIKIHEHIKVVPPSSSTQTTTTTPLTFFDIIWLRFHPAERIYFYTLHDPHSHPSFFFQEIVPNLKSSLSLTLQHFLPLAGKIVWPSDSSKPFIQFDPSDDDIGVSLHIVESDADFNHVIGNSPHEASLSRSFIPHLESSDSFFASIISLQITFFPNCGFSIGITAHHGVFDGKSLSMFIKAWAYLCNKIIGLETPTLLPELEPLFNTDIIIGTNENNLIKILSKIFPSEKGNERSLKIFPYEPKLEDSLRATFKLTRADLDKIKQDVLSKWEIFNPNESKPQTLSSFTLTCAHSLVCIAKSIHEVEQEKEKFAFAFAIDCRARLETPLPNNYFGNCVLASFINTQPIDFINEDGVFVVAKCIYEKIKMINKKGIFEESIFDLFDKYRTLNNEGYETFGVAGSNKLGAYKNNFGYGRPEKVELVSIDKDLSIGFGDSGDGDGEVEIGLVLNKHVMNTFSTLFLEGLCVN 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00439 474 PANTHER - 8 471 - -
Vivi6g00439 474 Pfam Transferase family 15 464 - -
Vivi6g00439 474 Gene3D - 3 230 IPR023213 -
Vivi6g00439 474 Gene3D - 251 473 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00439 Vivi-Chr6 11227426 11243121 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00439 20 469 Monolignol Biosynthesis Gene Families AT5G48930 22.484 9.74e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00439 - - tpra:123889238 622.854