Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00430 ATGGCGTTCTTTGGAAAAATTGGGAACTTACTCAAGAGCTCTGCTGTCAAGCACATCAATCATGATATTTCTATGTCTACTCCTTTGGCATTCCAAGCGATTAGATCTATGTCATCTGCGAAGCTTTTTGTTGGAGGTATTTCATATAGCACTGATGATACCAGTCTCCGAGAACATTTTGCTCGCTATGGGGAAGTTATTGATGCAAGGGTTATTACAGATCGTGAAACAGGAAGGTCCCGAGGTTTTGGCTTCATAACTTTTACAACAAGCGAGGATGCATCTGCTGCCCTTCAGGCCATGGATGGCCAGGATCTTCATGGTCGGACAGTACGAGTGAACTATGCTACAGAAAGGTCACGTCCTGGGTTTGGTGGTGGAGGCGGCTATGGAGGAGGTGGAGGCTATGGCGGAGGTGGTGGATACGGTGGTGGTGGTGGCTATGGAGGCGGTGGCGGAGGCGGATATGGTGGTGGTGGATTTGGTGGTGGCGGCTATGGTGGTAGTACTTATGGTCGTAATGATAATAGAAACAGTGGAAGCTATGGAAGTGGTAGTTATGGTGCCCCGGGAAGCTATAGTGGTGGCAATGTCGAGACTAGTTACGCTGCTGCTCCTGGTGAACAGGGAAGCAACTCTAATTTGGGATATGATGGTCAACTTGGTAGCCACCAAGATGGTGGTGAATTCGTTGAGCCACTTGAAAACAACCATGCGGCAGAGAACAATGATGAACCTAACGACTACGCAGAGACTCGGAGGTGA 765 0.4876 MAFFGKIGNLLKSSAVKHINHDISMSTPLAFQAIRSMSSAKLFVGGISYSTDDTSLREHFARYGEVIDARVITDRETGRSRGFGFITFTTSEDASAALQAMDGQDLHGRTVRVNYATERSRPGFGGGGGYGGGGGYGGGGGYGGGGGYGGGGGGGYGGGGFGGGGYGGSTYGRNDNRNSGSYGSGSYGAPGSYSGGNVETSYAAAPGEQGSNSNLGYDGQLGSHQDGGEFVEPLENNHAAENNDEPNDYAETRR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00430 254 MobiDBLite consensus disorder prediction 238 254 - -
Vivi6g00430 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Vivi6g00430 254 SUPERFAMILY RNA-binding domain, RBD 24 150 IPR035979 GO:0003676
Vivi6g00430 254 FunFam Glycine-rich RNA-binding protein 3 mitochondrial 21 140 - -
Vivi6g00430 254 MobiDBLite consensus disorder prediction 199 254 - -
Vivi6g00430 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Vivi6g00430 254 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 29 212 - -
Vivi6g00430 254 MobiDBLite consensus disorder prediction 199 220 - -
Vivi6g00430 254 CDD RRM2_NsCP33_like 41 116 - -
Vivi6g00430 254 Gene3D - 16 137 IPR012677 -
Vivi6g00430 254 SMART rrm1_1 41 114 IPR000504 GO:0003723
Vivi6g00430 254 PRINTS Eggshell protein signature 125 140 - -
Vivi6g00430 254 PRINTS Eggshell protein signature 180 198 - -
Vivi6g00430 254 PRINTS Eggshell protein signature 36 52 - -
Vivi6g00430 254 PRINTS Eggshell protein signature 154 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00430 Vivi-Chr6 10842344 10845827 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00430 42 119 Eukaryotic Initiation Factors Gene Family AT1G49760 35.897 3.46e-10 58.2