Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00429 ATGGCGTTCTTTGGAAAAATTGGGAAGTTACTCAAGAGCTCTGCTGTCAAGCACATCAATCATGATATTTCTATGTGTACTCCTTTGGCATTCCAAGCAATTAGATCTATGTCATCTGCAAAGCTTTTTGTTGGAGGAATTTCATATAGCACTGATGATACCAGTCTCCGAGAACATTTTGCTCGCTATGGGGAAGTTATTGATGCAAGGGTTATTACGGATCGTGAAACAGGAAGGTCCCGAGGTTTTGGCTTCATAACTTTTACAACAAGCGAGGATGCATCTGCTGCCCTTCAGGCCATGGATGGCCAGGATCTTCATGGTCGGACAGTACGAGTGAACTATGCTACAGAAAGGTCACGTCCTGGGTTTGGTGGTGGAGGCGGCTATGGAGGAGGTGGAGGCTATGGCGGAGGTGGTGGATACGGTGGTGGTGGTGGCTATGGAGGCGGTGGCGGATATGGTGGTGGTGGATTTGGCGGTGGCGGTTATGGTGGTAGTACTTATGGTCGTAATGATAATAACAACAGTGGAAGCTATGGAAGTGGTAGTTATGGTGCCCCAGGAAGCTATAGTGGTGGCAATGTCGAGACTAGTTACGCTGCTCCTGGTGAACAGGGAAGCAACTCTAATTTGGGATATGATGGTCAACTTGGTAGCCACCAAGATGGTGGTGAATTCGTTGAGCCACTTGAAAACAACCATGCGGCAGAGATCAATGATGAACCTAATGACTACGCAGAGACTCGGAGGTGA 756 0.4802 MAFFGKIGKLLKSSAVKHINHDISMCTPLAFQAIRSMSSAKLFVGGISYSTDDTSLREHFARYGEVIDARVITDRETGRSRGFGFITFTTSEDASAALQAMDGQDLHGRTVRVNYATERSRPGFGGGGGYGGGGGYGGGGGYGGGGGYGGGGGYGGGGFGGGGYGGSTYGRNDNNNSGSYGSGSYGAPGSYSGGNVETSYAAPGEQGSNSNLGYDGQLGSHQDGGEFVEPLENNHAAEINDEPNDYAETRR 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00429 251 PRINTS Eggshell protein signature 36 52 - -
Vivi6g00429 251 PRINTS Eggshell protein signature 125 140 - -
Vivi6g00429 251 PRINTS Eggshell protein signature 178 196 - -
Vivi6g00429 251 PRINTS Eggshell protein signature 152 162 - -
Vivi6g00429 251 MobiDBLite consensus disorder prediction 196 217 - -
Vivi6g00429 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Vivi6g00429 251 Gene3D - 27 137 IPR012677 -
Vivi6g00429 251 SUPERFAMILY RNA-binding domain, RBD 25 150 IPR035979 GO:0003676
Vivi6g00429 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Vivi6g00429 251 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 25 208 - -
Vivi6g00429 251 MobiDBLite consensus disorder prediction 235 251 - -
Vivi6g00429 251 FunFam Glycine-rich RNA-binding protein 3 mitochondrial 22 140 - -
Vivi6g00429 251 CDD RRM2_NsCP33_like 41 116 - -
Vivi6g00429 251 SMART rrm1_1 41 114 IPR000504 GO:0003723
Vivi6g00429 251 MobiDBLite consensus disorder prediction 196 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00429 Vivi-Chr6 10798243 10801704 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00429 42 119 Eukaryotic Initiation Factors Gene Family AT1G49760 35.897 3.69e-10 57.8