Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00427 ATGGAACAAAGAAAAAAGATCTTTGTTCATGTTTTGATGTTTTTGTTCATGGTCCTACTTAGAGAAACCAACATTGTTCAAGGGGGTGAAGAAGAAGATAGGATCTTTCAACTTCCTGGTCAACCTAAGGTTTTGTTTGATCAATTTTCTGGCTATGTTACTGTTAACCATGTTGCTGGTAGAGCTCTCTTTTATTGGTTAACTGAAGCTCAACAAAATGCTATCAATAAACCTCTTGTTATTTGGCTTAATGGAGGTCCAGGTTGTTCATCAGTGGCTTATGGAGCATCTGAAGAGATTGGCCCATTTAGATTAAACAAAACAGCTTCTGGGCTTTACATTAACAAGTTTTCATGGAACACAGTGGCCAACCTTTTATTCTTGGAAGCTCCGGCCGGCGTCGGTTTCTCCTACACCAACCACTCTTCCGACCTCCTCGACACCGGCGATCACCGCACCGCTAAGGACTCTCTGGAATTTGTAATTCAGTGGCTAGAAAGATTCCCACGTTACAAAAATAGAGAACTTTACATTACTGGAGAGAGTTATGCAGGGCATTATGTTCCTCAATTAGCAAAGGAGATTATGACTTATAATGTTAAAGCCAAACAACCCATCAACCTCAAGGGAATAATGGTTGGGAATGCAGTGACAGACAACTATCATGATAACTTGGGCACAGTAACGTACTGGTGGAGCCATGCTATGATCTCTGATCAAACATACAAACAACTTATTAACAAATGTGATTTTCATCACCAGAAAGAATCTGATGAGTGTGAATCTTTATATTCTTATGCCATGGATAAAGAGTTTGGCAATATTGATCAGTACAATATCTATGCTCCTCCGTGTAACAAATCCGATGGAAGTTCTTCCCGTTCGCGCCACACCATGCGGTTGCCCCACCTTCCTCATCTGGCTTTTAGGAAAATGGCTGGATATGATCCATGTACAGAAAAATATGCAGAGGTTTACTACAATAGGGCAGATGTTCAAAAAGCACTTCATGCTAACACAACTGGCATTCCTTATAAGTGGACTGCTTGCAGTGAAGTTTTGAATAGAAATTGGAATGATACAGATGAATCTATTCTTCCACTTTATAGAGAGTTGATAGCTCATGGTGTAAGAGTTTGGGTCTTCAGTGGGGATGTAGACTCAGTGGTGCCAGTAACAGCAACCAGATTTTCACTTGCAGAGCTTAGGTTGACAACTAAAATACCATGGTACCCTTGGTATGTCAAAAAACAGGTTGGAGGATGGACAGAGGTGTATGAAGGGTTAACATTTGCCACAGTGAGAGGAGCAGGTCATGAAGTTCCATTATTCAAGCCTAGAGCAGCTCTTCAATTATTCAAATCATTTCTTGCAGGAAAGCCTCTTCCAAAAGTCCAAAACTAG 1404 0.4074 MEQRKKIFVHVLMFLFMVLLRETNIVQGGEEEDRIFQLPGQPKVLFDQFSGYVTVNHVAGRALFYWLTEAQQNAINKPLVIWLNGGPGCSSVAYGASEEIGPFRLNKTASGLYINKFSWNTVANLLFLEAPAGVGFSYTNHSSDLLDTGDHRTAKDSLEFVIQWLERFPRYKNRELYITGESYAGHYVPQLAKEIMTYNVKAKQPINLKGIMVGNAVTDNYHDNLGTVTYWWSHAMISDQTYKQLINKCDFHHQKESDECESLYSYAMDKEFGNIDQYNIYAPPCNKSDGSSSRSRHTMRLPHLPHLAFRKMAGYDPCTEKYAEVYYNRADVQKALHANTTGIPYKWTACSEVLNRNWNDTDESILPLYRELIAHGVRVWVFSGDVDSVVPVTATRFSLAELRLTTKIPWYPWYVKKQVGGWTEVYEGLTFATVRGAGHEVPLFKPRAALQLFKSFLAGKPLPKVQN 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00427 467 Gene3D - 365 459 - -
Vivi6g00427 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 429 442 IPR001563 GO:0004185|GO:0006508
Vivi6g00427 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 127 IPR001563 GO:0004185|GO:0006508
Vivi6g00427 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 138 IPR001563 GO:0004185|GO:0006508
Vivi6g00427 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Vivi6g00427 467 FunFam Carboxypeptidase 365 459 - -
Vivi6g00427 467 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 446 IPR001563 GO:0004185|GO:0006508
Vivi6g00427 467 ProSitePatterns Serine carboxypeptidases, serine active site. 178 185 IPR018202 GO:0004185
Vivi6g00427 467 SUPERFAMILY alpha/beta-Hydrolases 37 463 IPR029058 -
Vivi6g00427 467 FunFam Carboxypeptidase 29 287 - -
Vivi6g00427 467 Pfam Serine carboxypeptidase 42 458 IPR001563 GO:0004185|GO:0006508
Vivi6g00427 467 Gene3D alpha/beta hydrolase 29 287 IPR029058 -
Vivi6g00427 467 ProSitePatterns Serine carboxypeptidases, histidine active site. 429 446 IPR033124 GO:0004185
Vivi6g00427 467 Gene3D - 318 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00427 Vivi-Chr6 10710493 10717073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00427 323 462 Calmodulin-binding Proteins AT2G22960 30.496 9.42e-15 70.9