Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00417 ATGGCTTCATCAATACGTAACCGCAAACCAAGTGAAATCTTCCATGGACAAAATCAACTTTACAAACACATGTACGGAATGTTAGATTCCATGTGTCTTAAATGGTGCATTGAAATGAACATACCAACCATAATCCACAATCATGGCAAACCAATTTCTCTTTCAGACCTAGTTTCGACTCTTCAAGTTCCGTCAACCAAATTCGGTAACGTTCAACGTCTCATGCGTTACCTCGCACACAATGGAATCTTCGAAATAATAATAACAAATCAAGAGTTGGAAAATAAAGAAGAAGCGTACGCTCTCACCGTCATCTCAGAACTTCTTGTTAAAGGAAGTGAACTTTGTTTAACACCGATGGTTGAGTTAGTTCTTGATCCAACTATTCTGGGTTCGTATCACGCGTTAAACAAATGGATTTATGAAGAAGAACTAACACTCTTTGATGTAACTTTAGGATCTGATATTTGGAAGTTTCTTAAGAAAAACCCTGATCATAACCGATTGTTTAACGACGCAATGGCGAGTGATTCCAAAATGATAAACTTGGCAATGAAAGATTGTGGTTTTGTGTTTGAAGGATTGGATTCTATTGTGGATGTTGGAGGTGGAACTGGAACATTGGGTAAGATTATTTGTGAGACATTTCCTAAGTTGAAATGTGTTGTGTTTGATCTTCCACAAGTTGTAGAAAATTTATCTGGAAACAACAATTTGACATATGTTGGTGGAGATATGTTCGCATCTATTCCTAAAGCAGACGCGGTTCTTCTTAAGACAATTTTACATGATTGGAATGATAAAGATTGCATAAAGATACTAGAGAAATGTAAAGAAGCAATTACAAGTGATGAGAAAATAGGAAAAGTGATCGCCATCGAAATTGTGATGAATGAAAAGAAAGATACTGAGCAAGTTACTCTATTGAAGATGCAACTTGATACATCCTTAGCATGTATACATGGAAAAGAAAGAAATGAGGAAGAATGGAAGAAACTTTTCATGGAAGCAGGTTTTAAAGACTACAAAATATTTCCTTTGACTGGATTTTTATCTCTTATTGAGATTTATCCTTAA 1077 0.3538 MASSIRNRKPSEIFHGQNQLYKHMYGMLDSMCLKWCIEMNIPTIIHNHGKPISLSDLVSTLQVPSTKFGNVQRLMRYLAHNGIFEIIITNQELENKEEAYALTVISELLVKGSELCLTPMVELVLDPTILGSYHALNKWIYEEELTLFDVTLGSDIWKFLKKNPDHNRLFNDAMASDSKMINLAMKDCGFVFEGLDSIVDVGGGTGTLGKIICETFPKLKCVVFDLPQVVENLSGNNNLTYVGGDMFASIPKADAVLLKTILHDWNDKDCIKILEKCKEAITSDEKIGKVIAIEIVMNEKKDTEQVTLLKMQLDTSLACIHGKERNEEEWKKLFMEAGFKDYKIFPLTGFLSLIEIYP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00417 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168
Vivi6g00417 358 Gene3D - 1 109 IPR036388 -
Vivi6g00417 358 PANTHER O-METHYLTRANSFERASE 24 343 IPR016461 GO:0008168
Vivi6g00417 358 Pfam O-methyltransferase domain 133 340 IPR001077 GO:0008171
Vivi6g00417 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 358 IPR016461 GO:0008168
Vivi6g00417 358 FunFam Coniferyl alcohol 9-O-methyltransferase 3 109 - -
Vivi6g00417 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 115 356 IPR029063 -
Vivi6g00417 358 FunFam O-methyltransferase ZRP4 111 358 - -
Vivi6g00417 358 SUPERFAMILY "Winged helix" DNA-binding domain 11 113 IPR036390 -
Vivi6g00417 358 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Vivi6g00417 358 Gene3D Vaccinia Virus protein VP39 110 358 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00417 Vivi-Chr6 10489501 10491128 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00417 31 356 Monolignol Biosynthesis Gene Families AT5G54160 30.422 5.18e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00417 K22588 K13262 ag:AAC49926 542.347