Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00412 ATGAGTTCATCAATCAATGGCCGAAAACCAAGTGAAATTTTCAAAGCACAAACTCTCTTATACAAACACATGTATGCCTTCATAGATTCCATGTCTCTTAAATGGACAGTTGAAATGAACATACCAAATATCATCCATGATCATGGCCAACCAATTACTCTATCAAACCTAGTTTCAGTTCTTCAAGTTCCATCGTCCAAATCGGGTAACGTGCGTAGTCTCATGCGTTACCTCGCACACAACGGCTTCTTTGAGATTGTAACTAATCGAGGTTTGAATAATGAAGAAGAAGCTTACGCTCTAACGGTTGCATCTGAGCTTCTTGTTAAAGGAAGTGACATTTGTTTAGCTCCAGTGGTTGAGGGTATTCTTGATCCAACGCTTTTGTGCTCCTTTCATGAGCTGAAAAAGTGGATTTATGAGGATGATCTTACACTCTTTGATGTTACTTTAGGATATGCTTTTTGGGATTTTCTTGATAAAAACCCTAATTTTAATAGATCATTCAACGAGGCAATGGCTTGTGATTCGAAAATGATAAACTTGGTTTTGAGAGATTGTAATTTTGTGTTTGAAGAATTGGAATCAATTGTAGACGTTGGTGGTGGAACTGGAACAACAGCTAAGATTATTTGTAAGACATTTCCTATGCTGAAATGTATTGTTTTTGATAGGCCACAAGTTGTTGAGAATTTATCTGACACCAAGAATTTGAGTTATGTTGGTGGTGACATGTTCATATCTATTCCTAATTCTGATACTATTCTTCTTAAGTGGATTTTACATAATTGGAGTGATAAAGATTGTATTAAGATATTGAAAAAATGTAAAGAAGCAGTTACAAGTGATGCAAAAAGAGGAAAAGTGATTGTGATAGAGATGGTGATAAATCAAAAGAAAGATGAGAAGAACATTACTCAAATGAAGCTCCTTATGGATGTAAACATGACATGTCTTTTTAATGGGAAAGAGAGAACTGAAGAAGAATGGAAGAAACTCTTCGCCGAAGCTGGCTTTCCAAACTATAAGATATCTCCTTTAACAGGATATTTATCCGTTATTGAAATATATCCTTAA 1077 0.351 MSSSINGRKPSEIFKAQTLLYKHMYAFIDSMSLKWTVEMNIPNIIHDHGQPITLSNLVSVLQVPSSKSGNVRSLMRYLAHNGFFEIVTNRGLNNEEEAYALTVASELLVKGSDICLAPVVEGILDPTLLCSFHELKKWIYEDDLTLFDVTLGYAFWDFLDKNPNFNRSFNEAMACDSKMINLVLRDCNFVFEELESIVDVGGGTGTTAKIICKTFPMLKCIVFDRPQVVENLSDTKNLSYVGGDMFISIPNSDTILLKWILHNWSDKDCIKILKKCKEAVTSDAKRGKVIVIEMVINQKKDEKNITQMKLLMDVNMTCLFNGKERTEEEWKKLFAEAGFPNYKISPLTGYLSVIEIYP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00412 358 FunFam O-methyltransferase ZRP4 110 358 - -
Vivi6g00412 358 PANTHER O-METHYLTRANSFERASE 15 343 IPR016461 GO:0008168
Vivi6g00412 358 FunFam Coniferyl alcohol 9-O-methyltransferase 3 108 - -
Vivi6g00412 358 SUPERFAMILY "Winged helix" DNA-binding domain 10 112 IPR036390 -
Vivi6g00412 358 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Vivi6g00412 358 Pfam O-methyltransferase domain 132 339 IPR001077 GO:0008171
Vivi6g00412 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168
Vivi6g00412 358 Gene3D Vaccinia Virus protein VP39 109 358 IPR029063 -
Vivi6g00412 358 Gene3D - 1 108 IPR036388 -
Vivi6g00412 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 358 IPR016461 GO:0008168
Vivi6g00412 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 356 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00412 Vivi-Chr6 10413817 10415101 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00412 26 344 Monolignol Biosynthesis Gene Families AT5G54160 32.615 4.54e-48 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00412 K22588 - ag:AAC49926 579.326