Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00390 ATGGCTCAATCTTTAGCTCTTTTGTTCTTTTTTATGATGCTCTTCATACAAACTATGGCAGGTGGCATTCACCCAAAATGGTATGATGCTCGTGCAACTTTTTATGGTGATGCAGCTGGTGCTGAAACCATGCAAGGAGCTTGTGGTTATGGTGATCTCTTCAAGCAAGGATATGGTCTTGCAACTACAGCACTAAGCACTGCTCTATTCAACAATGGACTTACTTGTGGTGCATGTTTTCAAATAATGTGTGTAAACGATCCTCAATGGTGCATAAAAGGTGCAACTCCAATTACAGTGACCGCAACAAATTTTTGTCCTCCTAATTATTCTAAAACCACCGACATTTGGTGTAACCCTCCACAAAAACACTTTGATTTGAGTTATAAAATGTTCACATCTATTGCCTATTATAAAGCTGGTGTCATTCCTGTTAAATATCGACGCGTTCCATGTGTCAAAAACGGGGGTGTTAGGTTTGAACTTAAAGGAAACCCTTACTTTTTGCTTGTTTTGGTGTACAATGTTGCTAATGCTGGTGATGTTTCTCATGTGAGTATTAGAGGATCTAAGACTGCTTTGCTTACTATGTCACATAATTCAGGACAAACTTGGCATATCAATCAGAATTTGGTAGGGCAAAGCTTGTCATTTCTAGTTACTACAAGTGATGGAAAATCTTTGCATTTTAATTCTGTTGCTCCTTCCAATTGGCAATTTGGACAGACTTATGAGAGCAAGCAAAATTTTAAAAAATAG 759 0.3794 MAQSLALLFFFMMLFIQTMAGGIHPKWYDARATFYGDAAGAETMQGACGYGDLFKQGYGLATTALSTALFNNGLTCGACFQIMCVNDPQWCIKGATPITVTATNFCPPNYSKTTDIWCNPPQKHFDLSYKMFTSIAYYKAGVIPVKYRRVPCVKNGGVRFELKGNPYFLLVLVYNVANAGDVSHVSIRGSKTALLTMSHNSGQTWHINQNLVGQSLSFLVTTSDGKSLHFNSVAPSNWQFGQTYESKQNFKK 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00390 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Vivi6g00390 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Vivi6g00390 252 Pfam Lytic transglycolase 62 147 IPR009009 -
Vivi6g00390 252 Gene3D - 154 251 IPR036749 -
Vivi6g00390 252 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Vivi6g00390 252 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Vivi6g00390 252 Gene3D - 17 152 IPR036908 -
Vivi6g00390 252 SUPERFAMILY Barwin-like endoglucanases 10 175 IPR036908 -
Vivi6g00390 252 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Vivi6g00390 252 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Vivi6g00390 252 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Vivi6g00390 252 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Vivi6g00390 252 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Vivi6g00390 252 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Vivi6g00390 252 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Vivi6g00390 252 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Vivi6g00390 252 PRINTS Expansin signature 232 248 IPR002963 GO:0009664
Vivi6g00390 252 PANTHER EXPANSIN-A15 8 248 IPR002963 GO:0009664
Vivi6g00390 252 SMART dpbb_1 62 147 IPR007112 -
Vivi6g00390 252 CDD DPBB_EXPA_N 27 152 - -
Vivi6g00390 252 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Vivi6g00390 252 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Vivi6g00390 252 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Vivi6g00390 252 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Vivi6g00390 252 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Vivi6g00390 252 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00390 Vivi-Chr6 9734793 9735730 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00390 22 250 Expansin Gene Family AT5G39280 65.939 1.06e-116 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00390 - - tpra:123886237 364.77