Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00388 ATGGCTATGTCTCCCTCTTTGGTTTCATTGTTGTTTTTCATGTTGCTCCTTGTTCAAGTTATGTCTGGTGGCATTGACTTAACTTGGTACGATGCTCGTGCAACCTTCTATGGTGATGCAGCTGGTGGTGAAACCATGCAGGGGGCATGTGGTTATGGCGACCTCTTCAAACAAGGGTATGGACTTGAAACCACAGCACTAAGCACTGCTTTATTTAATAATGGATTTACTTGCGGTGCATGTTTTCAAATAATGTGTGTTAATGATCCTCAATGGTGCATAAAGGGTGCAGCACCAATCAAGGTGACAGCAACAAATTTTTGTCCTCCAGATTATTCCAAAACCACGGACATTTGGTGCAACCCTCCACAAAAACACTTTGATTTGAGTTATAAAATGTTCACATCTATTGCCTATTATAAAGCTGGTGTTATCCCTGTTAAATATCGACGTGTTCCATGCGTAAAAAGTGGAGGTGTTAGGTTTGAGCTAAAAGGAAATCCTTATTTTTTGATGGTTTTGGTTTACAATGTTGCCAATGCTGGTGATGTTAGTAATGTGAGTATTCGAGGATCTAAGACTGGCTGGATTACCATGTCGCATAATTGGGGACAAAATTGGGATGCCAAAATGAATTTTTTAGGGCAAAGTTTGTCATTTCTTGTTACTACAAGTGATGGAAAAACTTTGAACTTTCCCCTTGTAGTTCCTTCCAATTGGCAATTCGGACAAACTTACGAGGGCAAGCAAAATTTTTAA 759 0.3966 MAMSPSLVSLLFFMLLLVQVMSGGIDLTWYDARATFYGDAAGGETMQGACGYGDLFKQGYGLETTALSTALFNNGFTCGACFQIMCVNDPQWCIKGAAPIKVTATNFCPPDYSKTTDIWCNPPQKHFDLSYKMFTSIAYYKAGVIPVKYRRVPCVKSGGVRFELKGNPYFLMVLVYNVANAGDVSNVSIRGSKTGWITMSHNWGQNWDAKMNFLGQSLSFLVTTSDGKTLNFPLVVPSNWQFGQTYEGKQNF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00388 252 Pfam Lytic transglycolase 64 149 IPR009009 -
Vivi6g00388 252 PANTHER EXPANSIN-A15 13 250 IPR002963 GO:0009664
Vivi6g00388 252 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Vivi6g00388 252 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Vivi6g00388 252 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Vivi6g00388 252 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Vivi6g00388 252 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Vivi6g00388 252 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Vivi6g00388 252 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Vivi6g00388 252 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Vivi6g00388 252 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Vivi6g00388 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Vivi6g00388 252 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Vivi6g00388 252 Gene3D - 159 252 IPR036749 -
Vivi6g00388 252 CDD DPBB_EXPA_N 29 154 - -
Vivi6g00388 252 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Vivi6g00388 252 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Vivi6g00388 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Vivi6g00388 252 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Vivi6g00388 252 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Vivi6g00388 252 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Vivi6g00388 252 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Vivi6g00388 252 SMART dpbb_1 64 149 IPR007112 -
Vivi6g00388 252 Gene3D - 21 154 IPR036908 -
Vivi6g00388 252 SUPERFAMILY Barwin-like endoglucanases 13 177 IPR036908 -
Vivi6g00388 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00388 Vivi-Chr6 9689619 9690700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00388 20 252 Expansin Gene Family AT5G39280 69.957 4.85e-126 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00388 - - ath:AT5G39280 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00388 6 9689619 9690700 Vivi6g00388 6 9689619 9690700 ECH