Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00368 ATGGGGTTGAAACTAACAAAGCAGGAACCACCCAAAATCAACAGTCCAACAAATTTGGAAATACATCATCGCATGATCCATTACCTTACCAAGAATTTCATTCGTAACTTGGTATCCAAGCAAAGGAGAAGAATTCTTATTGCTGGCTATGATCTTGACATGTCATATATCACAGATAGAGTTCTGGCAATGTCATTTCCTGCCGAACGTATGAGAGCAGTGTATAGAAATCCTCTCTGGCAGGTTAAATCTGTGTTGGATATGAGACATCAAGAACATTATAAGGTCTATAATCTGTGTATAGAAGAAAGTTATGATCCAGCACACTTCTACGGTCGTGTGGAAGCATACCCTTTTGATGACAATCATGTGCCATCTCTTCAAATGGTTAAAAATTTCTGCGAAAGTGTCGATTCATGGCTGTCAAAAGACCCGAGAAATATTGCTGTTATTCATTGCATGGCAGGTAAAGGTAGAACTGGCTTAATGGTGAGTGCATACCTAGCTTATTGCGGCATGTCAGCAGATGAAGCTCTTCAATTATATGCAGATAGAAGAACAACAAATAATGAAGGAGTATCAATACCGAGCCAACGTCGTTACGTAGGGTACTGGGAAAGTCTGCTTTCTGTCCCTAGAGGGATTGGATATGGATCTCCAATTGTGAATTTGCCTCCACCCTGTAGCAGAGAATTACGGCGAATCCGATTGTACGATACTGCAAACATTGACACGGTTTTCTTTGTTATATCAGAACTGCAGGAGATTCCTAACGAGGTCTACCGTCCAGCCATCGAAATTTGTAGGAGCTGCTGTAGAGAGGTTAAGAAAGGTTATCAAAGAACAAACAGTCCGCGCTATTATATTTCTATACCTGAAGGTGATGAAGATGGAAAACAATCGGAAATAGAAGAACCTCGTGTCGTAGTTCAAATGGATACAGAAACTCCTGCGATATACCAGAAATCTTGTTTGGACCATTATTTTGATAAACCTATACAGGTAATAGGAGATGTTCGTGTGATATTCTATGAGAAAATGATCGGAGGCCGTCTTTTCTACTGTTGCTTTAATACAGCTTTTATTAGGAACAGCTTACTACAGCTCACAGTAAAGGATTTGGACAAAGTTGGGAAGAAAGGAAGATCGATTTGTGGACCTACATTCTGCGTAGAATTATTGTTTGGACCTGCGAACACAGGATACACGTCTTCAAATATATCTCTTGGGGAAAATTTCACCGATGATTCACTATAA 1257 0.3994 MGLKLTKQEPPKINSPTNLEIHHRMIHYLTKNFIRNLVSKQRRRILIAGYDLDMSYITDRVLAMSFPAERMRAVYRNPLWQVKSVLDMRHQEHYKVYNLCIEESYDPAHFYGRVEAYPFDDNHVPSLQMVKNFCESVDSWLSKDPRNIAVIHCMAGKGRTGLMVSAYLAYCGMSADEALQLYADRRTTNNEGVSIPSQRRYVGYWESLLSVPRGIGYGSPIVNLPPPCSRELRRIRLYDTANIDTVFFVISELQEIPNEVYRPAIEICRSCCREVKKGYQRTNSPRYYISIPEGDEDGKQSEIEEPRVVVQMDTETPAIYQKSCLDHYFDKPIQVIGDVRVIFYEKMIGGRLFYCCFNTAFIRNSLLQLTVKDLDKVGKKGRSICGPTFCVELLFGPANTGYTSSNISLGENFTDDSL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00368 418 ProSitePatterns Tyrosine specific protein phosphatases active site. 151 161 IPR016130 GO:0016311|GO:0016791
Vivi6g00368 418 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 30 212 - -
Vivi6g00368 418 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 131 186 IPR000387 GO:0016311|GO:0016791
Vivi6g00368 418 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 209 IPR029021 -
Vivi6g00368 418 CDD PTP_PTEN 53 208 IPR045101 GO:0016791
Vivi6g00368 418 ProSiteProfiles Phosphatase tensin-type domain profile. 43 212 IPR029023 -
Vivi6g00368 418 ProSiteProfiles C2 tensin-type domain profile. 243 398 IPR014020 -
Vivi6g00368 418 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 23 402 - -
Vivi6g00368 418 Pfam Tyrosine phosphatase family 141 183 IPR026893 GO:0004721
Vivi6g00368 418 Pfam C2 domain of PTEN tumour-suppressor protein 320 395 IPR014020 -
Vivi6g00368 418 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 305 397 IPR035892 -
Vivi6g00368 418 Gene3D - 269 400 - -
Vivi6g00368 418 Gene3D Protein tyrosine phosphatase superfamily 29 211 IPR029021 -
Vivi6g00368 418 SMART PTEN_C2_2 225 397 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00368 Vivi-Chr6 9227904 9231103 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00368 1 402 Protein tyrosine phosphatase (PTP) family AT5G39400 67.822 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00368 K01110 - gmx:100809938 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00368 6 9227904 9231103 Vivi6g00368 6 9227904 9231103 ECH