Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00366 ATGGTTCTAGGTGCCAGTATGGTGTTTCCTGAAGTTCTTAATGCTGCTATTGAACTCAACCTTTTTGAAATCATTGCTAAAGAAAGCATTGATGGATTCATGTCAACCTTCAAAATTGCTACGAAGTTACCGGCTCAACACTCTGACTTGCCAAATGGGCGCGAAAGTATGTTGCGCATGCTTGCTAGCTACAATCTTCTTTCTGTTTCCACTCGCGCCAATGACGATGGTAGCACTATGAGAGTTTATGGAATCACATCTTCTGGAAAATACTTTGTTGATGATGAAAATGATGGTGGTTATTTGGGCTCTTTCACATCATTTATGTGCCATGCGCTTTGTTAG 345 0.4087 MVLGASMVFPEVLNAAIELNLFEIIAKESIDGFMSTFKIATKLPAQHSDLPNGRESMLRMLASYNLLSVSTRANDDGSTMRVYGITSSGKYFVDDENDGGYLGSFTSFMCHALC 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00366 114 Pfam Dimerisation domain 12 62 IPR012967 GO:0046983
Vivi6g00366 114 PANTHER O-METHYLTRANSFERASE 3 99 IPR016461 GO:0008168
Vivi6g00366 114 Gene3D - 6 114 IPR036388 -
Vivi6g00366 114 SUPERFAMILY "Winged helix" DNA-binding domain 5 96 IPR036390 -
Vivi6g00366 114 FunFam Caffeic acid 3-O-methyltransferase 1 92 - -
Vivi6g00366 114 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 114 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00366 Vivi-Chr6 9206061 9207142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00366 1 97 Monolignol Biosynthesis Gene Families AT5G54160 36.082 9.51e-14 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00366 - - vvo:131608855 228.409