Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00360 ATGTATACACTGATTACACAAACACACACGAAACTAAAAAATCTCATCATTTTCTTCATTTTTCTTTTTCTCTTTAATTTCCACACCAACCACCAACCGCCGCAAACCATGTCCACCGCCAATCCCTCCGACACCGACACGGCGTCACCGCCGACACGTCCCACCATCACCCTCCCGCCTCGCCCCTCCGTCGAAGCATTCTTCGCCGGCGCCGCGAGTCCCGGTCCGATGACACTTGTTTCGAGCTTCTTCGCTACTGAATCCGCCACTTTCTCTCAGCTTCTCGCCGGAGCTATGGCGTCCCCGCTCGCGTACTCCTCCGCCGCGGCGGAGAATTACTTCGTTAAAGAAGATGACGGTTCTCAGAGAAATACCGGGTTTAAACAGAGTCGGCCGATGAATTTGATTGTTGCACGGTCGCCGGTTTTTACTATTCCTCCCGGTTTGAGTCCGTCTGGGTTTTTGAACTCTCCTGGATTCTTTTCTCCACAGAGCCCATTTGGGATGTCACACCAACAAGCTTTAGCTCAGGTTACAGCTCAAGCTGTCCTAGCGCAATCTCATAATATGCACATGCAACCTGAATATCAGCTGGTCTCATTAGAACCTCCCACTGAACGAATGGTAGAGCAGCCGTCTTATACTCGTAATGAAGCTTCGGAGCAGCAACTGGCAGCAGCACCTGTACCAGAATCTAGAAATGCTCAAATGGAAACGTCGGAGGTTACACATTCTGATAAGAAATATCAACCACCTTCCCTACCGATTGACAAACCTGCAGATGATGGCTACAACTGGCGCAAGTATGGACAGAAGCAGGTTAAGGGGAGTGAGTATCCGCGGAGCTACTACAAATGCACGCATCTGAATTGTCCCGTCAAGAAAAAAGTTGAGCGTGCCCCTGACGGTCACATAACTGAAATTATCTATAAAGGTCAGCATAATCATGAGAAGCCTCAGGTAAATAGGCGTGTCAAAGAAAATAGTGACGGGAATGGAAATGCAAATGTTCAACCTAACTCAAACTCACAAGGTTGGTTAGGAAATACAAACAAAACTAGTGAAAGTGTACGTGATTGTTCGGTGCCTGAAAGTGATTTGATCTCCAATCAAGGGGCTTCTAGGCCACTACCGGGATCAAGTGAAATTGTGGAAGTGGATGATGCAGACAATAGGGAAGAGGGAGGCGACTCTGAGCCAAATCCAAAGAGAAGGAGCATTGAGCCTGTGGTTCCTGAAGCACCACCTGCGTCTCAGAAGACTGTCACAGAACCCAAAATCATTGTGCAAACAAGAAGTGAAGTTGATCTTTTAGATGATGGCTACAGGTGGAGAAAGTATGGTCAGAAAGTGGTGAAGGGAAATCCTCATCCAAGGAGTTATTACAAGTGCACAAGTGCAGGATGCAATGTGCGCAAACACGTTGAGAGAGCATCAACGGACCCAAAAGCTGTGATAACTACATATGAGGGAAAACATAATCACGACGTCCCCGCCGCTAGAAACAGCAGCCACCATACAGCTAATAGCAATTCAATGCCATCAAAGCCGCAGGCTAGGTTGCCAGAGAAGCACCCTCTGCTTAAAGATATGGAGTTCGGAAACAATGATCAGAGACCTGTACATTTACGCTTAAAAGAAGAGCAAATCATAGTATAA 1659 0.4732 MYTLITQTHTKLKNLIIFFIFLFLFNFHTNHQPPQTMSTANPSDTDTASPPTRPTITLPPRPSVEAFFAGAASPGPMTLVSSFFATESATFSQLLAGAMASPLAYSSAAAENYFVKEDDGSQRNTGFKQSRPMNLIVARSPVFTIPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVLAQSHNMHMQPEYQLVSLEPPTERMVEQPSYTRNEASEQQLAAAPVPESRNAQMETSEVTHSDKKYQPPSLPIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERAPDGHITEIIYKGQHNHEKPQVNRRVKENSDGNGNANVQPNSNSQGWLGNTNKTSESVRDCSVPESDLISNQGASRPLPGSSEIVEVDDADNREEGGDSEPNPKRRSIEPVVPEAPPASQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHHTANSNSMPSKPQARLPEKHPLLKDMEFGNNDQRPVHLRLKEEQIIV 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00360 552 Gene3D WRKY domain 254 320 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g00360 552 Gene3D WRKY domain 423 499 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g00360 552 MobiDBLite consensus disorder prediction 200 264 - -
Vivi6g00360 552 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 157 518 IPR044810 GO:0003700
Vivi6g00360 552 MobiDBLite consensus disorder prediction 34 60 - -
Vivi6g00360 552 MobiDBLite consensus disorder prediction 210 239 - -
Vivi6g00360 552 MobiDBLite consensus disorder prediction 494 522 - -
Vivi6g00360 552 MobiDBLite consensus disorder prediction 310 325 - -
Vivi6g00360 552 SUPERFAMILY WRKY DNA-binding domain 430 498 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g00360 552 ProSiteProfiles WRKY domain profile. 433 498 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g00360 552 MobiDBLite consensus disorder prediction 34 52 - -
Vivi6g00360 552 FunFam WRKY transcription factor 33 425 491 - -
Vivi6g00360 552 FunFam WRKY transcription factor 247 320 - -
Vivi6g00360 552 SUPERFAMILY WRKY DNA-binding domain 259 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g00360 552 ProSiteProfiles WRKY domain profile. 261 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g00360 552 SMART WRKY_cls 260 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g00360 552 SMART WRKY_cls 438 497 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g00360 552 MobiDBLite consensus disorder prediction 326 377 - -
Vivi6g00360 552 MobiDBLite consensus disorder prediction 310 422 - -
Vivi6g00360 552 MobiDBLite consensus disorder prediction 501 517 - -
Vivi6g00360 552 Pfam WRKY DNA -binding domain 261 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g00360 552 Pfam WRKY DNA -binding domain 439 495 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00360 Vivi-Chr6 9166854 9170913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00360 42 550 WRKY Transcription Factor Family AT2G03340 50.185 1.04e-141 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi6g00360 WRKY 1.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00360 - - vvo:131608851 1097.42