Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00359 ATGGGTTGTGTGAACTCCAAGAAAGGTCTGGCAGGAGAAACCAACACGGTTTCTCCTGTGGGACCTTATGTTTATACGGGTTCGCGAAAAAGGAGCAATGGTTCTGGGAGGAGCATGGTGGTGGAGGCTTCTTCTTCTTCTAGAGGACATTCTGGTGTTTTGGTGACACAACAACAGCATCAGCAACAGCAGCAACAGCAACAACAGCAACAGCAGCATGATGAGGTGAAGAAAAAGGAAGAAAGGAAGAAGGGAGATTTGAATGTGAGGATTGGTTTCTCACATAGGTTTGTTGAAGGTGAACAGGTTGCTGCTGGTTGGCCTTCTTGGCTTACTTCTGTTGCTGGTGAAGCCATTCATGGTTTGGTCCCTCTCAAAACTGATTCTTTTGAGAAATTAGATAAGGTTGGACAAGGTACATATAGCAGTGTTTTCCAAGCTCGCGAAGTCGAGACAGGGAAGATGTTTGCGTTGAAGAAGGTGCGGCTTGACACACTTCAACCGGAGTGCATTAGGTTCATGGCGCGGGAGATCATAATTCTCCGCACACTTGACCACCCTAACATCATGAAATTAGAGGGTATAGTCACTTCACAATTATCAAATAGTATATACCTTGTATTCGAATACATGGAGCATGATCTCGCTGGCCTAATATCTAACCCCGATATCAAGTTCACAGACTCACAGATTAAGTGTTACATGAGACAGCTATTGAGTGGAATCGAGCATTGTCACCTACGCGGTATCATGCATCGAGACATTAAAGTATCAAACATATTAGTTAACAACGAAGGAATTCTAAAGATCGGAGACTTTGGATTAGCAAACACCATTAGTCAAAGTAGCAAACATCCGTTAACAAGCCGCGTAGTGACTCTATGGTATCGTCCTCCCGAGCTTTTGATGGGATCGACAAACTATGGAGTTACAGTCGATCTGTGGAGCGTAGGGTGCGTGTTTGCCGAACTTTTTCTAGGGAAGCCCGTCCTTAAGGGGAGAACTGAGGTGGAACAATTGCACAAAATATTTAAGCTTTGCGGGTCTCCGCCTGAAGAGTTTTGGAAAAAGAGCAAGCTTCCGCTTGCAACAATGTTTAAGCCTCAGACAAGTTACGAAAGCTCGCTTTCGGAGAGATGTAAAGGTTATATTCCTTTATATGCTGTGAACCTACTTCAGACCTTACTCTCCATTGATCCATCCAAACGCGGTACTGCCTCTTCCGCGCTTATGTCCGAGTATTTCAACACCGCGCCGTATGCTTGTAATCCATCACTTCTGCCAAAATATCTACCAAGCAAAGAGATGGATGCTAAAAACAGGGAAGACCAGCAAAGGAAAAAGAATGGAGCTAAAGTGCGAGAACGAGATGCTGTGACGTCTGGAAGGCAAAGACGGGCACATAAAGTTGTGCAGGATCCTCACAATGTCAGCAAACCAGCTTGGAAAGAGGGAATGCATAATATTTCTCTAAACTCTGGTAAAGACGGCGACAATAAACCGCATCACACAAAGGGAAAAGGAGGAGCTATACACAAAGAGCAACAAAAACATCTATATGATACAAAATCAGACACTGCAGATAAGATGAATGGTTACAACGGCTATAGTGCGTACACAGGACCGACACAAGTCTCAGGATCTAGCGGCTTTACGTGGGTGAAAAGAAGAAAACCAGAAGCTTCGTCAATATTATCAGACGGCTCAAGAAGCAAAATCAGCGCAATGGATCCAACCTTCGCGAAAGGCACATATGACTTAACGAAAAACGGGACAGACGTTTCAGAAAGGAAACATACTTACAACGCAAGCCATCGCGACGAGGCTTCCAAGCATGCACTATCAAAGCAGCAGGGTCGTAATGTTCAATCTGAATCGTTTGATGTTGCTGATATATACAGTTCCAACTATTACATGGATTTCGATCTCGCAGAAAAAACGAATGCTCATACAAATGCACAGGACCATACAAACTATGGTGAGCCTGTGGAGCTATCAGTACCAACTACGACTCAAACAGATAAAAACGGCGAGTTAAATTGGGACGAAAATAACAAGTGGCGACAATCTCTTCGAAAATCAAGGTTGGGAAGAGACAAATGA 2103 0.4403 MGCVNSKKGLAGETNTVSPVGPYVYTGSRKRSNGSGRSMVVEASSSSRGHSGVLVTQQQHQQQQQQQQQQQQHDEVKKKEERKKGDLNVRIGFSHRFVEGEQVAAGWPSWLTSVAGEAIHGLVPLKTDSFEKLDKVGQGTYSSVFQAREVETGKMFALKKVRLDTLQPECIRFMAREIIILRTLDHPNIMKLEGIVTSQLSNSIYLVFEYMEHDLAGLISNPDIKFTDSQIKCYMRQLLSGIEHCHLRGIMHRDIKVSNILVNNEGILKIGDFGLANTISQSSKHPLTSRVVTLWYRPPELLMGSTNYGVTVDLWSVGCVFAELFLGKPVLKGRTEVEQLHKIFKLCGSPPEEFWKKSKLPLATMFKPQTSYESSLSERCKGYIPLYAVNLLQTLLSIDPSKRGTASSALMSEYFNTAPYACNPSLLPKYLPSKEMDAKNREDQQRKKNGAKVRERDAVTSGRQRRAHKVVQDPHNVSKPAWKEGMHNISLNSGKDGDNKPHHTKGKGGAIHKEQQKHLYDTKSDTADKMNGYNGYSAYTGPTQVSGSSGFTWVKRRKPEASSILSDGSRSKISAMDPTFAKGTYDLTKNGTDVSERKHTYNASHRDEASKHALSKQQGRNVQSESFDVADIYSSNYYMDFDLAEKTNAHTNAQDHTNYGEPVELSVPTTTQTDKNGELNWDENNKWRQSLRKSRLGRDK 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00359 700 Pfam Protein kinase domain 130 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00359 700 CDD STKc_CDK9_like 130 415 - -
Vivi6g00359 700 ProSitePatterns Protein kinases ATP-binding region signature. 136 159 IPR017441 GO:0005524
Vivi6g00359 700 MobiDBLite consensus disorder prediction 28 71 - -
Vivi6g00359 700 SMART serkin_6 130 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00359 700 MobiDBLite consensus disorder prediction 653 678 - -
Vivi6g00359 700 MobiDBLite consensus disorder prediction 1 83 - -
Vivi6g00359 700 ProSiteProfiles Protein kinase domain profile. 130 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00359 700 PANTHER CELL DIVISION PROTEIN KINASE 128 419 - -
Vivi6g00359 700 MobiDBLite consensus disorder prediction 437 473 - -
Vivi6g00359 700 FunFam probable serine/threonine-protein kinase At1g54610 117 212 - -
Vivi6g00359 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Vivi6g00359 700 SUPERFAMILY Protein kinase-like (PK-like) 124 420 IPR011009 -
Vivi6g00359 700 MobiDBLite consensus disorder prediction 496 512 - -
Vivi6g00359 700 Gene3D Phosphorylase Kinase; domain 1 121 212 - -
Vivi6g00359 700 FunFam probable serine/threonine-protein kinase At1g54610 213 455 - -
Vivi6g00359 700 MobiDBLite consensus disorder prediction 589 623 - -
Vivi6g00359 700 MobiDBLite consensus disorder prediction 437 512 - -
Vivi6g00359 700 MobiDBLite consensus disorder prediction 591 614 - -
Vivi6g00359 700 Gene3D Transferase(Phosphotransferase) domain 1 213 455 - -
Vivi6g00359 700 MobiDBLite consensus disorder prediction 653 700 - -
Vivi6g00359 700 MobiDBLite consensus disorder prediction 679 700 - -
Vivi6g00359 700 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00359 Vivi-Chr6 9156480 9160827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00359 127 548 Core Cell Cycle Gene Families AT5G10270 39.910 6.83e-107 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi6g00359 Pkinase 7.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00359 - - lja:Lj1g3v2982400.1 946.806