Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00341 ATGTCTCCTCTTGGATTTCTTCTCCTTGGAATTCTCTACATGGTTTCTCATGTAAATGGCCATGGTGGCCATGCTAGTTGGATTAATGCTCATGCTACTTTCTATGGCGGAAGTGATGCTTCCGGAACAATGGGTGGAGCTTGTGGATATGGAAATTTGTATAGCCAAGGTTATGGAACAAATACAGCAGCATTAAGCACAGCATTATTCAACAATGGATTGAGTTGTGGAGCATGTTATGAAATTAAGTGTGTGAATGATCCACAATGGTGTACTCCTGGATCCATTATAGTTACTGCCACTAATTTCTGTCCTCCTGGTGGTTGGTGTGACCCTCCAAATCACCATTTTGATCTTTCTCAACCTATTTTTCAACACATTGCTCAATATAAAGCAGGGATTGTACCAGTGGCTTACAGAAGGGTAAGATGCAGAAGAAGAGGAGGAATTAGGTTCACTATCAATGGACATTCTTACTTCAATTTAGTACTAGTGACAAATGTTGGAGGAGCTGGTGATGTACATTCTGTGGCCATAAAAGGTTCAAGAACAAGATGGCAAGCCATGTCAAGAAATTGGGGGCAAAATTGGCAAAGTAACTCTTACCTTAATGGACAAAGTCTTTCATTTGTTGTCACCACAAGTAATGGTCATAGTGTGGTTTCTTTCAATGCTGCTCCTGCTAGCTGGTCTTTTGGTCAAACCTATACCGGAAGACAATTCAACTATTAA 732 0.4057 MSPLGFLLLGILYMVSHVNGHGGHASWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCVNDPQWCTPGSIIVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYKAGIVPVAYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSFNAAPASWSFGQTYTGRQFNY 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00341 243 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Vivi6g00341 243 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Vivi6g00341 243 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Vivi6g00341 243 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Vivi6g00341 243 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Vivi6g00341 243 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Vivi6g00341 243 SMART dpbb_1 62 139 IPR007112 -
Vivi6g00341 243 SUPERFAMILY Barwin-like endoglucanases 26 167 IPR036908 -
Vivi6g00341 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Vivi6g00341 243 PRINTS Expansin signature 160 181 IPR002963 GO:0009664
Vivi6g00341 243 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Vivi6g00341 243 PRINTS Expansin signature 224 240 IPR002963 GO:0009664
Vivi6g00341 243 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Vivi6g00341 243 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Vivi6g00341 243 PRINTS Expansin signature 124 137 IPR002963 GO:0009664
Vivi6g00341 243 PRINTS Expansin signature 107 124 IPR002963 GO:0009664
Vivi6g00341 243 PRINTS Expansin signature 148 160 IPR002963 GO:0009664
Vivi6g00341 243 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Vivi6g00341 243 FunFam Expansin 16 145 - -
Vivi6g00341 243 FunFam Expansin 149 241 - -
Vivi6g00341 243 Gene3D - 149 241 IPR036749 -
Vivi6g00341 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 238 IPR007117 -
Vivi6g00341 243 Pfam Expansin C-terminal domain 150 227 IPR007117 -
Vivi6g00341 243 PANTHER EXPANSIN-A15 14 241 IPR002963 GO:0009664
Vivi6g00341 243 CDD DPBB_EXPA_N 27 139 - -
Vivi6g00341 243 Pfam Lytic transglycolase 62 139 IPR009009 -
Vivi6g00341 243 SUPERFAMILY PHL pollen allergen 146 238 IPR036749 -
Vivi6g00341 243 Gene3D - 15 145 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00341 Vivi-Chr6 8418697 8420838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00341 1 241 Expansin Gene Family AT2G03090 78.715 1.58e-140 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00341 K20628 - gmx:100790170 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g04776 2 166477213 166479562 Vivi6g00341 6 8418697 8420838 PCT