Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00333 ATGGGATCCAATGTTATTGTTTCTGAACCAAAAATGGATAACAAAAAGTTTGAATTACCGCCCGGTTTTCGATTCCATCCGACCGACGTAGAGCTCATATACCAATACCTTGTCAAGAAAGTTTATGACAATAGCTTCTCTGCTATAGCTATTGCTGAAGTTGATATGAATAAGTGTGAACCATGGGATTTGCCAGAGTTGGCAAAAATGGGAGAAATTGAATGGTATTATTTTTGTGTGAGGGACAAAAAATATTCAACTGGTCAAAGAACAAATAGGGCTACTAATGCTGGTTATTGGAAGGCCACAGGAAGAGACAAAGAAATTTACGACAAAAATGTATTGATTGGGATGAAGAAAACATTGGTTTTCTATAAAGGAAGAGCTCCAAGTGGTTTAAAAACTAGTTGGGTCATGCATGAATACAGGTTGGAGGGTAACACACTCTCTAAGGATATTTTATCAAAGAGAGGAACGGCTGAATGGGTAATAAGTAGAATCTATAAGAAGGGTAACTCTGAAAAGAAAACATATCATCCAAGACTTGGAAGGGTTAACTCCTTTAAAGAAGGATCACCAAGTACTTATGAATCTCCATTGATGAATTCTTATCCATCCATTAATGGTGAATGCTCTAATGTGATCAATTCATTAACCATTCCAAATCAAGCACAAGACAACAACAATGTTGGCAACAATGAAGCTAGTATCATGAACATTCCAAAACAAGTTGATGCTCACCCTTTTGTTGAAGAAACCCAAAACCTTTCCTTGTCTCAAGAACTATCTATGATGATGGCTCAATTAGAGAATGAGAATTATGGATCAAGTTCAAAGCAAAGTCTTCAACATGATTTTTCTCTTGATGCTGATATCTCATCTATTTTATATGGAAATGACATGTTTCCAATGTGGTATGACAATCAAGAATTGATTCCCAATTCTCCTGAACCTATGGTCACTGATCACTTGTGGAATTACTAA 984 0.3608 MGSNVIVSEPKMDNKKFELPPGFRFHPTDVELIYQYLVKKVYDNSFSAIAIAEVDMNKCEPWDLPELAKMGEIEWYYFCVRDKKYSTGQRTNRATNAGYWKATGRDKEIYDKNVLIGMKKTLVFYKGRAPSGLKTSWVMHEYRLEGNTLSKDILSKRGTAEWVISRIYKKGNSEKKTYHPRLGRVNSFKEGSPSTYESPLMNSYPSINGECSNVINSLTIPNQAQDNNNVGNNEASIMNIPKQVDAHPFVEETQNLSLSQELSMMMAQLENENYGSSSKQSLQHDFSLDADISSILYGNDMFPMWYDNQELIPNSPEPMVTDHLWNY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00333 327 Gene3D NAC domain 28 175 IPR036093 GO:0003677|GO:0006355
Vivi6g00333 327 FunFam NAC domain-containing protein 100-like 28 174 - -
Vivi6g00333 327 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Vivi6g00333 327 ProSiteProfiles NAC domain profile. 19 170 IPR003441 GO:0003677|GO:0006355
Vivi6g00333 327 SUPERFAMILY NAC domain 16 170 IPR036093 GO:0003677|GO:0006355
Vivi6g00333 327 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00333 Vivi-Chr6 8332742 8334679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00333 18 327 NAC Transcription Factor Family AT5G07680 45.652 4.00e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi6g00333 NAM 8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00333 - - cam:101488836 365.54