Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00331 ATGGGAAGATCACCATGTTGTGAAAAAGTTGGTTTAAAGAAAGGACCATGGACACCGGAGGAAGATCAAAAACTTTTATCTTACATCGAAGAACACGGTCACGGAAGCTGGCGTGCTCTCCCTGTAAAAGCCGGACTTGAGAGGTGTGGCAAGAGTTGTAGGTTGAGATGGACTAATTATTTGAGGCCGGATATTAAGAGAGGGAAGTTTAGTTTGCAAGAAGAGCAAACTATTATTCAACTTCATGCACTTTTAGGCAACAGGTGGTCATCAATAGCCACACATTTACCTAAGAGAACAGACAATGAAATCAAGAACTATTGGAACACACATCTTAAGAAAAGGTTAACAAAAATGGGAATTGATCCGGTTACACACAAGCCAAAAAATGAAACCCTTTTCTCTGATAATCACTCTAAGAATGCTGCAAATCTTAGTCACATGGCTCAATGGGAAAGTGCAAGACTTGAAGCTGAAGCAAGATTGGTTAGAGAATCAAAGCTACGATCACAATATTCATTGCAACAACAACATCATCAACTTGGAAGTAGTAATAATTCGGTTTTTCCATCTCAATCTTCGTCATCGGCTTCATCGTCTTCGATTCAAGTACTTGATGTTAAAGAAGAAGGTGAGAAAGAGTGGAAAGGCTATGAGGATTCAACACATTTGTTAGAATTCAAGGATCTCATTGAGGGTTCATCAATGGCTTTTAGTTCTACCATGCAACATGATATGGCGATGATCAATGTTGCCGAAGAAGGTTTCACTAATCTCTTGCTCGATAATTCTAACTCCGATGACCCGAGTTTGTCACCGGAGAGTGGTGGAGAGTGTAATAATTGCGACGGAAATGACGGTGCGAGTGGGGGTGATTTCTACGAAGATAACAAGAATTACTGGAACAATATTCTTAATCTAGTTAATTCTTCGCCTTCTGATCCGTTATTCTGA 954 0.3994 MGRSPCCEKVGLKKGPWTPEEDQKLLSYIEEHGHGSWRALPVKAGLERCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSSIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNETLFSDNHSKNAANLSHMAQWESARLEAEARLVRESKLRSQYSLQQQHHQLGSSNNSVFPSQSSSSASSSSIQVLDVKEEGEKEWKGYEDSTHLLEFKDLIEGSSMAFSSTMQHDMAMINVAEEGFTNLLLDNSNSDDPSLSPESGGECNNCDGNDGASGGDFYEDNKNYWNNILNLVNSSPSDPLF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00331 317 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi6g00331 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi6g00331 317 MobiDBLite consensus disorder prediction 173 206 - -
Vivi6g00331 317 MobiDBLite consensus disorder prediction 262 283 - -
Vivi6g00331 317 CDD SANT 69 112 IPR001005 -
Vivi6g00331 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi6g00331 317 CDD SANT 16 61 IPR001005 -
Vivi6g00331 317 FunFam MYB transcription factor 69 116 - -
Vivi6g00331 317 SMART sant 66 114 IPR001005 -
Vivi6g00331 317 SMART sant 13 63 IPR001005 -
Vivi6g00331 317 MobiDBLite consensus disorder prediction 262 279 - -
Vivi6g00331 317 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi6g00331 317 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vivi6g00331 317 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi6g00331 317 Gene3D - 13 66 - -
Vivi6g00331 317 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi6g00331 317 Gene3D - 68 144 - -
Vivi6g00331 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 240 - -
Vivi6g00331 317 FunFam MYB-related transcription factor 13 66 - -
Vivi6g00331 317 MobiDBLite consensus disorder prediction 173 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00331 Vivi-Chr6 8289293 8291751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00331 1 314 MYB Transcription Factor Family AT3G01140 56.941 4.36e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi6g00331 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00331 K09422 - gmx:100781637 383.259