Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00321 ATGCAATCCTCTAATTGTGTTGAAGGGTCATCATCAAGTTTGAGAAAAGGTGCATGGAGTCAACATGAAGATGAACTTCTCAAAGATTGTGTTCAACGTTATGGAGAAGGAAAATGGCACTTAGTTCCTCAAAGAGCAGGGTTGAAGAGATGTAGAAAGAGTTGTAGATTGAGATGGTTGAATTATTTGAAACCAAATATTAAGAAGGGAGATTTTAGTGAAGATGAAGTTGATTTGATGATCAAATTGCATAATCTTTTGGGAAACAGATGGTCCTTGATTGCTGGAAGACTTCCTGGAAGAACTTCAAACAATGTAAAAAATTATTGGAACACATACATGCGAAGCAAAGAACATTCTTCAAAGAAAGACAAGAACAAACCAAAGGAAGAGATAGAAAAAGTAGAAAAATCTCATCATGAAGTGATTAAACCTCAACCAAGAACTTTCACAAAACCATTGTTGGAAGTGAATAAGTTCCATGGCTCAAATGATAATTCTTCCAAAGTTACTATGAATGAGTTATGTGAAGGTGAAAGTTCATCAAGAACAAGTAATTGGTGGGAAGCTTTTTTATTAGATGACAATGAAGATAATAATCACTTATTGCAAACGGGCTTTTGGGATGAGCAACAGCTTAACATGACAACTAATTCTTTTGACTTTTTTAGTGAAGGTCAAACTTGGAGTGATTTTCTTGCTCAATTTTGA 711 0.3446 MQSSNCVEGSSSSLRKGAWSQHEDELLKDCVQRYGEGKWHLVPQRAGLKRCRKSCRLRWLNYLKPNIKKGDFSEDEVDLMIKLHNLLGNRWSLIAGRLPGRTSNNVKNYWNTYMRSKEHSSKKDKNKPKEEIEKVEKSHHEVIKPQPRTFTKPLLEVNKFHGSNDNSSKVTMNELCEGESSSRTSNWWEAFLLDDNEDNNHLLQTGFWDEQQLNMTTNSFDFFSEGQTWSDFLAQF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00321 236 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Vivi6g00321 236 SMART sant 15 65 IPR001005 -
Vivi6g00321 236 SMART sant 68 116 IPR001005 -
Vivi6g00321 236 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 182 - -
Vivi6g00321 236 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vivi6g00321 236 Gene3D - 71 144 - -
Vivi6g00321 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Vivi6g00321 236 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Vivi6g00321 236 CDD SANT 18 63 IPR001005 -
Vivi6g00321 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Vivi6g00321 236 FunFam Myb transcription factor 16 68 - -
Vivi6g00321 236 CDD SANT 72 114 IPR001005 -
Vivi6g00321 236 Gene3D - 16 68 - -
Vivi6g00321 236 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vivi6g00321 236 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00321 Vivi-Chr6 8103180 8105136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00321 10 195 MYB Transcription Factor Family AT1G66370 46.818 7.51e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi6g00321 Myb_DNA-binding 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00321 - - gmx:100781091 268.085