Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00308 ATGGCGGCAGCAGCTATTGTATTCACCGTCTCCCATGACGGAACCGGAGATTTTCAAACCGTGCAACAAGCAATCGATGCTGTGCCGTTCGGCAACTCTCGCCGGACTGTCATCCGTGTATCTCCCGGAATCTACCGCCAGCCTGTATACGTTCCCAAAACCAAGAATTTCATCACTCTTGCTGGGTTGTGTCGTGAGGATACTGTGATTACTTGGAATAACACTGCCACCAAAATTGATCACCATCAACATGCTAGGTTGATTGGTACTGGGACATTTGGTTGTGGAACTACCATTGTGGAAGGGGAAGACTTTATTGCTGAGAATATCACTTTTGAGAATTCTTCCCCTCAGGGTTCAGGACAGGCAGTGGCAATTAGAGTGACAGCAGATCGTTGCGCCTTCTACAATTGCAGGTTCCTTGGATGGCAGGACACGCTGTACTTACATTACGGTAAACAATATTTGAAAGATTGCTATATTGAAGGAAGTGTGGACTTCATCTTCGGCAATAGCACTTCTCTTTTAGAGCACTGTCATATTCACTGCAAATCTACAGGGTACATAACCGCACAGGCTAGAAAATCGTCGCAGGAAACAACCGGTTATGTATTCTTGAGATGCGTTATCACAGGTAACGGAGGAACTTCATATGCATATCTTGGACGACCGTGGGGACCTTTTGGAAGGGTGGTTTTTGCGTACACTTACATGGATCAATGTATAAGACAAGTTGGTTGGGATAACTGGGGGAAAGTCGAGAATGAGAGAAGTGCTTGCTTTTATGAATACAGATGTTTTGGACCTGGTTGTTGTCCAACCGATCGAGTAGGATGGTGTAGAGAATTGATTGATGAAGAATCAGAACAGTTCATCACGCATCCTTTCATTGATCCAGAACCAGAAAGATCTTGGCTTTGTCAAAGAATGGGTTTGAGGATTCCATATTCTGCTTAG 957 0.4472 MAAAAIVFTVSHDGTGDFQTVQQAIDAVPFGNSRRTVIRVSPGIYRQPVYVPKTKNFITLAGLCREDTVITWNNTATKIDHHQHARLIGTGTFGCGTTIVEGEDFIAENITFENSSPQGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTSLLEHCHIHCKSTGYITAQARKSSQETTGYVFLRCVITGNGGTSYAYLGRPWGPFGRVVFAYTYMDQCIRQVGWDNWGKVENERSACFYEYRCFGPGCCPTDRVGWCRELIDEESEQFITHPFIDPEPERSWLCQRMGLRIPYSA 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00308 318 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 300 - -
Vivi6g00308 318 ProSitePatterns Pectinesterase signature 2. 161 170 IPR033131 -
Vivi6g00308 318 Pfam Pectinesterase 9 298 IPR000070 GO:0030599|GO:0042545
Vivi6g00308 318 SUPERFAMILY Pectin lyase-like 2 300 IPR011050 -
Vivi6g00308 318 FunFam Pectinesterase 4 311 - -
Vivi6g00308 318 Gene3D - 3 310 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00308 Vivi-Chr6 7857487 7860589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00308 7 309 Carbohydrate Esterase AT5G47500 38.978 4.13e-70 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00308 K01051 - gmx:100795636 603.979