Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00277 ATGGACATAACTCCAACCCCAACACCAACATCATCAACAACACCAACACCACTACCAACCATTTTAACAACATCCACAACAACCTTAACAAAATCACCAGAACATGAAACTGAAACACCCACCAAAATCACCACTCCCACTACCACAACAACAAAACTATCTTCTTTCTCCAACGGTGTCCTCAAACGCCTCCACAACCACCACCACCACAACCACCTTAACAACCACCATCTCAACCACCACCACCACCTCAACAACAACAACAACCTTGTAACAATCACTTACAAAGAATGTCTCAAGAACCACGCAGCAAACCTAGGTGGTCACGCCCTCGACGGCTGCGGCGAATTCATGACATCCCCCACCGCAACATCCGCCGACCCAACATCCTTAAAATGCGCTGCCTGTGGCTGTCACCGTAACTTCCACCGCCGTGAACCCGAAGAGCCACCACTCTCCACCACAACCCATGTCATCGAATATCAACCTCACCACCGTCATCAACCTCTCCCACCTCCGCCGTTCTCCACCCGCAGCCCAAACTCCTCCTCCCCACCTCCGATCTCCTCCACCTACTACCCCTCCGCCCCTCACATGCTCCTCGCCCTCTCCACCGCCCTACCGGAAAACGTCTCCGCTCCTAACTCCGCCATGATCTCTCCCGGCTCCCACACCAGAAAACGCTTCCGGACAAAATTCACTCAAGATCAGAAAGAAAAGATGCTGAAATTCGCCGAGAAAGTTGGGTGGAAGATGCAGAAAAAAGATGAAGATTACGTCCATGAATTCTGCAACGAAATCTGCGTCGATCGAAGTGTTCTCAAAGTCTGGATGCATAACAACAAGAACACTTTCGCCAAACGCGACAACAACAACCTCAACGACAACAACCTTAACAACCTCAACAACCTTAACAATATCAACAACGAGAATATTAATGTTGGTGTCAAGAGTTTCATGCCACTTGAGAATGAAGAACAAAACATCAATAACAACAACAAAGGTGAAACCAAACTTGAGATCCATACTCATAATCATAATCATAATCTTCACTACCAGAATGATGTTGGAGTAACTGTTATGCATGCTAATGGTTCATCTTCTTCTTGA 1110 0.4739 MDITPTPTPTSSTTPTPLPTILTTSTTTLTKSPEHETETPTKITTPTTTTTKLSSFSNGVLKRLHNHHHHNHLNNHHLNHHHHLNNNNNLVTITYKECLKNHAANLGGHALDGCGEFMTSPTATSADPTSLKCAACGCHRNFHRREPEEPPLSTTTHVIEYQPHHRHQPLPPPPFSTRSPNSSSPPPISSTYYPSAPHMLLALSTALPENVSAPNSAMISPGSHTRKRFRTKFTQDQKEKMLKFAEKVGWKMQKKDEDYVHEFCNEICVDRSVLKVWMHNNKNTFAKRDNNNLNDNNLNNLNNLNNINNENINVGVKSFMPLENEEQNINNNNKGETKLEIHTHNHNHNLHYQNDVGVTVMHANGSSSS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00277 369 MobiDBLite consensus disorder prediction 1 53 - -
Vivi6g00277 369 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 94 146 IPR006456 -
Vivi6g00277 369 Coils Coil 290 310 - -
Vivi6g00277 369 MobiDBLite consensus disorder prediction 163 191 - -
Vivi6g00277 369 MobiDBLite consensus disorder prediction 166 181 - -
Vivi6g00277 369 FunFam Zinc-finger homeodomain protein 2 213 287 - -
Vivi6g00277 369 NCBIfam homeobox domain, ZF-HD class 226 283 IPR006455 -
Vivi6g00277 369 SUPERFAMILY Homeodomain-like 216 287 IPR009057 -
Vivi6g00277 369 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 95 146 IPR006456 -
Vivi6g00277 369 Pfam ZF-HD protein dimerisation region 93 147 IPR006456 -
Vivi6g00277 369 Gene3D - 213 287 - -
Vivi6g00277 369 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 71 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00277 Vivi-Chr6 6563563 6565268 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00277 21 290 ZF-HD Transcription Factor Family AT5G15210 48.746 3.29e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vivi6g00277 ZF-HD_dimer 3.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00277 - - vvo:131611177 515.768