Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00258 ATGAACTTCAAATATTCTTTACTTTATAATTTCTATGATCTGAAAATGTGGATGGCCTTTCTTCTTAGTTGGAGTTTGATCATTGAAATCCAATCTTCTGCCACTCCAACATCTCAACTTCAAATGGAAGCAAATTCCATATTGAAGAGTGGATGGTGGAACACCTCTGATGCTCAATTTAATATCTCAAGACGTTGTGATTGGCCTGCTATATCTTGCAATAAGGATGGAAGCATATATGAAATCAACATAATAAGTACTAGTATTTATTATGTTAATTTTTCAGCACTCAACCTATCTGTTTTCCACAATTTAGAAAGCCTTGTTTTAAGTTCAATTGGACTGCACGGAGTTGTTCCAAAAGAAATTGGTCTCCTCTCCAAGCTCACTCATCTTGATTTGTACTCAAATGCTCTTGGAGGTGAGATCCCTCCTTCACTAGGAAATCTCACAAAACTCACTCTTCTTGGTTTGTCTTTTAATAATCTAAAAGGTGATTTGCCTCCTTCACTAGGAAATCTCACAAAACTCACTGAGCTTGATTTGTTCTCTAATGCTCTTGGAGGTGAGATCCCTCCTTCACTAGGAAATCTTACAAAACTCACTTATCTTTCTTTGTCCTCAAATTCTCTTGTAGGTGAGATCCCTCCTTCACTAGGGAATCTTACAAAACTCACTCATCTTTCTTTGTCCTCAAATTCTCTTGTAGGTGAGATCCCTCCTTCACTAGGGAATCTTACAAAACTCACTCATCTTGCTTTGTCCTCAAATTCTCTTGTAGGTGAGATCCCACTTTCACTAAGAAACCTTAGACAATTAAAATACTTATACATCTCTAGAAATAAGATTCAAGGTTTCATTCCTTCAATAGGAAATCTCACACACCTACAAGAGTTAGACTTCTCTAACAACAACATTCAAGGTATCATTCCTCATGCGTTGGGATTCTTGAACAACCTCACAAGATTAGATCTATCTTACAATAGACTAAATGGAAACTTGCCTCTTTCCTTTGCAAATCTCACCAAGTTAGAATACCTTGACATCTCTAACAATAAGATTCAAGGTTTCATTCCTTCAATAGGAAATCTCACACACCTACAAGAGTTAGACTTCTCTAACAACAACATTCAAGGTTTCATTCCTCATGAGTTGGGCTTCCTGAACAATCTCATAACGTTAGGTCTATCTTACAATAGACTAAATGGAAACTTTCCTCTTTCCTTTGCAAATCTCACCAAGTTAGAATACCTTGACATCTCTAACAATTTTCTCAATGGTTCTCTCCCATCTAACTTAGGTCAATTAACAAATTTGAAAATGTTACAGTTAAGTACAAACTTCATTCATGGGACCATTCCAATTTCGGTAACAAATCTCTCTCAATTAGAAAATCTTAACATTTCTTACAACATACTCTTTGGCAGCCTTCATTCCAATTTTTTTCAATGGGCAAATTATAATACTTTTTTAATAGACCTCAGTCACAATTTTATTAGTGGTGAAGTCCCATCTCCGTATGAAAATTTTCAACACCTTTACCTCAACAATAACAATTTAACAGGAATAATTCCACAATCTCTTTGTGATATCGATTATGTGGATATTTCCAACAACTGTTTCAAGGGTCCAATTCCATATTGTACTAACATTTATACGAGGAACAAAGATGAATGTATCAACACTTCTATTAGAAAATTCCAACCATGGTCACCTCCCAAGAGAAATAATAAAGTAAGGCACAATCTTGTCATAGTTCTTCCTGTTATTATTATTCTAATTATAGCATTATCACTCCTCGTATGCTTGAAACTTCGTCATAGTTCTATAAAAAACAATCATGGAATTACAATGAGAAAAAGGAATGGAGATTTGTTTTGTATATTGAATTACGACGGAAAAATTGCATATGACGACATTATTAAAGCAACAGAAGACTTTGATATAAGATATTGCATTGGAACAGGAGCATATGGAAGTGTTTATAAGGCACGATTACCATGTGGTAAAGTTGTTGCCTTAAAGAAACTTCACGGATATGAAGCCGAGATTTCATCTTTTGATGAGAGTTTTAGAAATGAAGTGAGAATTTTATCAGAAATAAAGCATCGACATATTGTGAAACTTTATGGATTCTGCTTGCACAAAAGAGTTATGTTTTTGATCTATCAGTACATGGAGAGAGGAAGTTTGTTCTCTATCTTATATGATGATGCAGAAGCCATGGAATTCAATTGGAGAAAAAGAGTTAACTTTGTTAAAGGAGTTGCATTTGGTCTGTCGTATCTTCATCATGATTGTCTAGTCCCAATAGTGCATAGAGATATATCTAGTGGCAACATCTTGCTAAACTCTGAGTGGGAGGCAAGTGTAGCTGACTTTGGTAGAGCTCGACTTCTTCAATATGAATCATCCAATCGAACTATAGTTGCTGGAACTATCGGATATATCGCTCCAGAACTTGCCTATACTATGGTTGTGAATGAAAAGTGTGATGTATATAGTTTTGGTGTAGTTGCACTTGAAACTTTAGTGGGCAGACATCCCGGAGATATATTGGCATTACTTCAATCAACATCAATCCAAGATATCAAATTATGTGAAGTATTAGACCAACGTCTCTCACTTCCAAACAATGATAGAGTTTTGCGTGACATAATTCGTGTTGCCGCAATTGCATTTGCCTGCTTAAATCTCAATCCTTGTTTACGGCCAACAATGAAAATTGTCTCACAAAGTTTTGTCATTGAGCTTCCACCATTTAGCATTCCATTGACTGGAATTTCTTTGCAACAACTCATGAGTCATGAACTCAAAGCTTTATTTCACATTGTAAATCTTTGA 2844 0.3537 MNFKYSLLYNFYDLKMWMAFLLSWSLIIEIQSSATPTSQLQMEANSILKSGWWNTSDAQFNISRRCDWPAISCNKDGSIYEINIISTSIYYVNFSALNLSVFHNLESLVLSSIGLHGVVPKEIGLLSKLTHLDLYSNALGGEIPPSLGNLTKLTLLGLSFNNLKGDLPPSLGNLTKLTELDLFSNALGGEIPPSLGNLTKLTYLSLSSNSLVGEIPPSLGNLTKLTHLSLSSNSLVGEIPPSLGNLTKLTHLALSSNSLVGEIPLSLRNLRQLKYLYISRNKIQGFIPSIGNLTHLQELDFSNNNIQGIIPHALGFLNNLTRLDLSYNRLNGNLPLSFANLTKLEYLDISNNKIQGFIPSIGNLTHLQELDFSNNNIQGFIPHELGFLNNLITLGLSYNRLNGNFPLSFANLTKLEYLDISNNFLNGSLPSNLGQLTNLKMLQLSTNFIHGTIPISVTNLSQLENLNISYNILFGSLHSNFFQWANYNTFLIDLSHNFISGEVPSPYENFQHLYLNNNNLTGIIPQSLCDIDYVDISNNCFKGPIPYCTNIYTRNKDECINTSIRKFQPWSPPKRNNKVRHNLVIVLPVIIILIIALSLLVCLKLRHSSIKNNHGITMRKRNGDLFCILNYDGKIAYDDIIKATEDFDIRYCIGTGAYGSVYKARLPCGKVVALKKLHGYEAEISSFDESFRNEVRILSEIKHRHIVKLYGFCLHKRVMFLIYQYMERGSLFSILYDDAEAMEFNWRKRVNFVKGVAFGLSYLHHDCLVPIVHRDISSGNILLNSEWEASVADFGRARLLQYESSNRTIVAGTIGYIAPELAYTMVVNEKCDVYSFGVVALETLVGRHPGDILALLQSTSIQDIKLCEVLDQRLSLPNNDRVLRDIIRVAAIAFACLNLNPCLRPTMKIVSQSFVIELPPFSIPLTGISLQQLMSHELKALFHIVNL 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00258 947 ProSitePatterns Protein kinases ATP-binding region signature. 653 675 IPR017441 GO:0005524
Vivi6g00258 947 FunFam Nuclear pore complex protein NUP107 29 192 - -
Vivi6g00258 947 Gene3D Ribonuclease Inhibitor 185 288 IPR032675 -
Vivi6g00258 947 PRINTS Leucine-rich repeat signature 320 333 - -
Vivi6g00258 947 PRINTS Leucine-rich repeat signature 341 354 - -
Vivi6g00258 947 Gene3D Phosphorylase Kinase; domain 1 611 725 - -
Vivi6g00258 947 Pfam Leucine rich repeat 271 330 IPR001611 GO:0005515
Vivi6g00258 947 Pfam Leucine rich repeat 343 401 IPR001611 GO:0005515
Vivi6g00258 947 ProSitePatterns Tyrosine protein kinases specific active-site signature. 771 783 IPR008266 GO:0004672|GO:0006468
Vivi6g00258 947 Gene3D Ribonuclease Inhibitor 338 563 IPR032675 -
Vivi6g00258 947 SUPERFAMILY RNI-like 191 532 - -
Vivi6g00258 947 FunFam Leucine-rich repeat receptor protein kinase EMS1 193 289 - -
Vivi6g00258 947 Pfam Protein kinase domain 652 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00258 947 ProSiteProfiles Leucine-rich repeat profile. 343 365 IPR001611 GO:0005515
Vivi6g00258 947 ProSiteProfiles Protein kinase domain profile. 647 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00258 947 FunFam Leucine-rich repeat protein kinase family protein 611 725 - -
Vivi6g00258 947 SUPERFAMILY L domain-like 85 237 - -
Vivi6g00258 947 FunFam MDIS1-interacting receptor like kinase 2 726 919 - -
Vivi6g00258 947 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 329 562 - -
Vivi6g00258 947 Gene3D Transferase(Phosphotransferase) domain 1 726 916 - -
Vivi6g00258 947 Pfam Leucine Rich Repeat 511 529 IPR001611 GO:0005515
Vivi6g00258 947 Pfam Leucine Rich Repeat 224 246 IPR001611 GO:0005515
Vivi6g00258 947 Pfam Leucine Rich Repeat 414 433 IPR001611 GO:0005515
Vivi6g00258 947 Pfam Leucine Rich Repeat 128 150 IPR001611 GO:0005515
Vivi6g00258 947 Gene3D Ribonuclease Inhibitor 289 337 IPR032675 -
Vivi6g00258 947 PANTHER LEUCINE RICH REPEAT KINASE 2 359 915 - -
Vivi6g00258 947 Gene3D Ribonuclease Inhibitor 32 184 IPR032675 -
Vivi6g00258 947 SMART LRR_typ_2 364 388 IPR003591 -
Vivi6g00258 947 SMART LRR_typ_2 293 316 IPR003591 -
Vivi6g00258 947 SMART LRR_typ_2 174 197 IPR003591 -
Vivi6g00258 947 SMART LRR_typ_2 270 292 IPR003591 -
Vivi6g00258 947 SMART LRR_typ_2 341 363 IPR003591 -
Vivi6g00258 947 SMART LRR_typ_2 198 221 IPR003591 -
Vivi6g00258 947 SMART LRR_typ_2 412 436 IPR003591 -
Vivi6g00258 947 SMART LRR_typ_2 126 150 IPR003591 -
Vivi6g00258 947 SMART LRR_typ_2 222 246 IPR003591 -
Vivi6g00258 947 SMART LRR_typ_2 317 340 IPR003591 -
Vivi6g00258 947 SMART LRR_typ_2 460 484 IPR003591 -
Vivi6g00258 947 SMART LRR_sd22_2 317 332 - -
Vivi6g00258 947 SMART LRR_sd22_2 341 366 - -
Vivi6g00258 947 SMART LRR_sd22_2 412 435 - -
Vivi6g00258 947 SMART LRR_sd22_2 222 248 - -
Vivi6g00258 947 SMART LRR_sd22_2 270 295 - -
Vivi6g00258 947 SMART LRR_sd22_2 436 468 - -
Vivi6g00258 947 SMART LRR_sd22_2 126 152 - -
Vivi6g00258 947 SMART LRR_sd22_2 174 200 - -
Vivi6g00258 947 Pfam Leucine Rich repeats (2 copies) 175 216 IPR025875 -
Vivi6g00258 947 SUPERFAMILY Protein kinase-like (PK-like) 633 912 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00258 Vivi-Chr6 5705528 5709214 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00258 104 819 Receptor kinase-like Gene Family AT4G08850 40.828 8.78e-162 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi6g00258 Pkinase 2.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00258 - - mtr:25501173 1044.65