Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00227 ATGGGTTATCTAAGAAAAGCTTCAAAAACCCTAAACCAATCAAATTGCATTTCACTCCTATTCAATTTCAATTTCAATTTGACACCATTAACAAGTAGAATAACACATCAACGATTTTCCTTAACTCGTGCACTTTTCTGTACCCAATCACGTCAAAGTAGCACCAAGGAGAAAGCTGTTATAGATTTGAGTCAGTACCCTCCAGAGCTTGTGAGGAATTTCTCGATAATTGCGCATGTGGATCATGGAAAATCTACTCTTGCTGATCGGCTTTTGGAACTTACTGGGACTATTAAGAAAGGACTTGGGCAGCCTCAGTATCTTGATAAATTGCAGGTGGAGAGAGAAAGGGGGATCACGGTTAAAGCTCAGACAGCAACAATGTTCTATAAGAACATCATAAATGGTGTTGATTCTATTGATGGAAAGGAATCACCTAATTATTTGCTGAATCTTATCGACACTCCTGGACATGTAGATTTCAGTTATGAAGTGTCAAGGTCACTAGCTGCTTGTCAAGGCGTGCTTTTGGTTGTTGATGCAGCTCAAGGAGTTCAAGCACAAACCGTCGCTAACTTTTACCTTGCCTTTGAATCTAACTTATCAATTATACCTGTCATAAACAAGATAGATCAGCCAACTGCTGATCCCGACCGTGTTAAATCGCAATTGAAATCGATGTTTGATCTTGACCCAGACGATGCATTGCTAACATCGGCTAAAACTGGGATGGGTCTTGAACATGTTCTTCCAGCAGTCATAGAGCGTATACCTCCACCTCCTGGGAAGAGTGATTCTCCTTTGCGTATGCTTTTACTTGATTCGTATTTTGATGAATACAGAGGGGTGATATGCCATGTTGCTGTCGTTGATGGTGCCCTGCGCAAGGGGGATAAGATTTCTTCAGCGGCCACTGGTAAATCATACGAAGCTTTGGATATAGGCATCATGCATCCTGAACTTACTCCTACCGGAATCTTGTTTACTGGACAAGTCGGTTATGTTATAAGTGGCATGCGGTCAACCAAAGAGGCACGTATTGGAGATACAATTTACCATTCACGAAGCACTGTGGATATAGAACCTCTTCCAGGCTTCAAAGCAGCAAAGCACATGGTTTTTTCTGGTCTTTTTCCAGCGGATGGATCTGATTTCGAACTACTCAACCATGCAATAGAGAAGCTTACTTGCAATGATGCCAGTGTCTCTGTCGCTAAAGAAACTAGCACTGCTCTAGGTCTAGGGTTCAGGTGTGGATTTTTAGGCCTTCTCCACATGGACGTTTTTCATCAAAGGCTTGAACAGGAATATGGAGCCCATATCATCTCAACCGTTCCTACTGTGCCTTATATATACGAGTACGCTGATGGAAGCAAATTAGAAGTTCAGAATCCCGCTGCATTACCGTCTAATCCCAAGCAACGAGTGGTAGCTTGTTGGGAACCCACAGTAATAGCTACTATAGTTATTCCTAGTGAGTATGTTGGAGCTGTTATCACCCTTGTCTCCGAGCGTAGGGGTGAACAATTAGAGTACTCGTTCATTGACAGTCAACGAGTTTTCTTGAAGTATCGTCTTCCTTTGAGGGAAATTGTTATCGACTTTTATAATGAATTGAAGAGTATAACATCAGGCTATGCATCATTTGATTACGAAGACTCAGATTATCAGGCATCTGATCTGGTGAAACTCGATATTCTCTTGAATGGACAACCAGTTGATGCAATGGCAACCATCGTTCATAACTCGAAAGCGTATCGTGTTGGCCGTGAATTAGTGGAGAAATTGAAGAAAGTCATAGACAGGCAAATGTTCGAGATATCCGTACAAGCCGCCATTGGGTCAAAAATCATAGCAAGAGAGACCATTACAGCTATGCGAAAAAATGTTCTTGCCAAGTGTTATGGCGGTGATATTACTCGAAAGAGGAAGCTTTTGGAGAAGCAAAAAGAAGGGAAAAAGCGAATGAAACGTGTCGGTTCTGTTGATATACCACAAGAAGCATTCCATGAACTATTGAAGGTTTCATAG 2031 0.4175 MGYLRKASKTLNQSNCISLLFNFNFNLTPLTSRITHQRFSLTRALFCTQSRQSSTKEKAVIDLSQYPPELVRNFSIIAHVDHGKSTLADRLLELTGTIKKGLGQPQYLDKLQVERERGITVKAQTATMFYKNIINGVDSIDGKESPNYLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLSIIPVINKIDQPTADPDRVKSQLKSMFDLDPDDALLTSAKTGMGLEHVLPAVIERIPPPPGKSDSPLRMLLLDSYFDEYRGVICHVAVVDGALRKGDKISSAATGKSYEALDIGIMHPELTPTGILFTGQVGYVISGMRSTKEARIGDTIYHSRSTVDIEPLPGFKAAKHMVFSGLFPADGSDFELLNHAIEKLTCNDASVSVAKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHIISTVPTVPYIYEYADGSKLEVQNPAALPSNPKQRVVACWEPTVIATIVIPSEYVGAVITLVSERRGEQLEYSFIDSQRVFLKYRLPLREIVIDFYNELKSITSGYASFDYEDSDYQASDLVKLDILLNGQPVDAMATIVHNSKAYRVGRELVEKLKKVIDRQMFEISVQAAIGSKIIARETITAMRKNVLAKCYGGDITRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHELLKVS 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00227 676 FunFam Translation factor GUF1, mitochondrial 364 445 - -
Vivi6g00227 676 NCBIfam small GTP-binding protein domain 75 248 IPR005225 GO:0005525
Vivi6g00227 676 SUPERFAMILY EF-G C-terminal domain-like 372 449 IPR035647 -
Vivi6g00227 676 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 109 124 IPR031157 -
Vivi6g00227 676 FunFam Translation factor GUF1, mitochondrial 446 558 - -
Vivi6g00227 676 PRINTS GTP-binding elongation factor signature 73 86 IPR000795 GO:0003924|GO:0005525
Vivi6g00227 676 PRINTS GTP-binding elongation factor signature 151 161 IPR000795 GO:0003924|GO:0005525
Vivi6g00227 676 PRINTS GTP-binding elongation factor signature 116 124 IPR000795 GO:0003924|GO:0005525
Vivi6g00227 676 PRINTS GTP-binding elongation factor signature 203 212 IPR000795 GO:0003924|GO:0005525
Vivi6g00227 676 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 69 261 IPR000795 GO:0003924|GO:0005525
Vivi6g00227 676 Gene3D - 446 558 - -
Vivi6g00227 676 Pfam Elongation factor Tu GTP binding domain 71 258 IPR000795 GO:0003924|GO:0005525
Vivi6g00227 676 CDD EF4_II 268 353 - -
Vivi6g00227 676 SUPERFAMILY Translation proteins 259 358 IPR009000 -
Vivi6g00227 676 Gene3D - 69 262 IPR027417 -
Vivi6g00227 676 Pfam Elongation factor G C-terminus 481 566 IPR000640 -
Vivi6g00227 676 NCBIfam translation elongation factor 4 71 675 IPR006297 GO:0005525
Vivi6g00227 676 PANTHER TRANSLATION FACTOR GUF1-RELATED 43 675 IPR006297 GO:0005525
Vivi6g00227 676 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 282 IPR027417 -
Vivi6g00227 676 Hamap Elongation factor 4 [lepA]. 67 676 IPR006297 GO:0005525
Vivi6g00227 676 CDD lepA_C 481 560 IPR035654 -
Vivi6g00227 676 CDD LepA 72 260 - -
Vivi6g00227 676 FunFam Translation factor GUF1, mitochondrial 263 361 - -
Vivi6g00227 676 Gene3D - 560 634 IPR038363 -
Vivi6g00227 676 FunFam Elongation factor 4 68 262 - -
Vivi6g00227 676 Pfam GTP-binding protein LepA C-terminus 568 674 IPR013842 -
Vivi6g00227 676 Gene3D Translation factors 263 360 - -
Vivi6g00227 676 CDD EF4_III 371 446 - -
Vivi6g00227 676 FunFam Translation factor GUF1, mitochondrial 560 634 - -
Vivi6g00227 676 SUPERFAMILY EF-G C-terminal domain-like 480 574 IPR035647 -
Vivi6g00227 676 Gene3D Elongation Factor G (Translational Gtpase), domain 3 364 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00227 Vivi-Chr6 5286317 5290674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00227 71 212 Eukaryotic Initiation Factors Gene Family AT1G56070 41.667 6.14e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00227 K21594 - gmx:100781092 1180.24