Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00226 ATGTCTAGCTCTAGTTGTTCAGAGATAGAAGAAAAGAGAGTTACTTCAATTTTCCATGAAGATGATTTCTCTACTCAACAAGAAGTTTCAAAAGAGGAAGATAAACTAAAATATACTAAAACCGAGATGGGAGAGGTGAAAGAAGAAAACGAAAGATTGAAGACGATGCTATCGCGAGTTGAAAAAGACTACAATACCCTTCAACTTCGTTTCTTTGACATCGTTAACAAAGAAGTTTCTAACAACGGAGTAGAAGAATCATCGGTTTCACATGAAGAAAACGATGAAGAACCCGAATTCGTGTCACTTTGTCTTGGAAGAAGTCCAAATGAGTATAAGAAAGAAGCGACAAAAATTGATCAAAATTCAAACAAGCCTAAAGAAAAAGAGGACATGGAAGTTAACCTTAGTCTTGGATTAGATTCTAAATATATGTTGTCAATGGAGTTAGAATCTGATTTGACTCCAATGAATAATAGCTTAGAAGAATTACCAAAGGAAGTTGAAGTTGAAGAAAAAGGAACATTATTTTCAACAAATAAGTCAACAAAGGTTATAAATGTAAATGATGATGTTTCTGATCAAATGCCTACTAAGAGAGTTAGGGTATCTGTTAGAGCTAAATGTGATACTCCAACGATGAATGATGGATGCCAATGGAGAAAATATGGACAAAAGATAGCAAAAGGAAATCCGTGTCCAAGAGCATACTATCGTTGCACGGTCGCACCAGCATGTCCAGTTAGAAAACAGGTCCAAAGATGTGCTGATGACATGTCAATCTTAATCACAACATATGAAGGAACACACAACCATCCTCTTCAAGTAACAGCATCAGCCATGGCATACACTACATCAGCTGCAGCATCAATGATGTTATCAGGCTCATCAACATCATCATCATCACATCATCAAAATCTTCATCATCAAAACTCAACATCTTTTGGGAACTCACCAGCATTACTCAACAATTGCCTAAATTTCAATCATCACCAATTCGAACAATCACGAACACCAAAACAACACTTCTTCATTCCACCAAACCATTCCTCACATAACAATTTGTTCCCAACAATCACTTTAGACCTAACTTCACCTTCATCCTTATCATCATCGTCATCGTCATCATCAAACATAGCTCCAGTTCCACGATTTTCTCCGAATAATCTCAATTTTTGTTCCGCGCAACAACCAAATTTCACTCCATCATCAACCATTTGGAACAACAACAAATTAGGGTTAGGGTTTATCAACAATAACACAATAATGCCTATGGAAAAAACTCAAATTAGGCCTTTCAACCATTTCCAAGAAAACTTCTACCAAAAGTGTGTGACAAATTATCAAACACCTTCAAGGCAAGCTTTGGCAGAAACAATAAGCAAAGCAATTAGCACTGATCCAAGTCTTCATTCAGTTATAGCAGCTGCAGTTACATCAATTGTAGGACAAGGATCAAACAATGGTGTGAATCAAAAGGAAACTAAAGAGAATGGTTTAGGTTTAGGGTTGAATTTGAAGCATGGTGAGTATCCTCAATTGGGTTCAAACAATTTGTTGAATCAAAATGGTAAAGGATGCTTAAAGGGTGCATCATACTTCAAAAGGTTGTCACCAACAACAAGTTCACAAGCCAAGAATTTCATGCTTCTTCAACCATCATTGCCATTTTCTGTGTCTAAGAGTAGTGCTAGCAAATCTTCATCCATTGTTAATCATGTCAATCATTGTGATTCAAAGATGAACACACATCATTAG 1758 0.3635 MSSSSCSEIEEKRVTSIFHEDDFSTQQEVSKEEDKLKYTKTEMGEVKEENERLKTMLSRVEKDYNTLQLRFFDIVNKEVSNNGVEESSVSHEENDEEPEFVSLCLGRSPNEYKKEATKIDQNSNKPKEKEDMEVNLSLGLDSKYMLSMELESDLTPMNNSLEELPKEVEVEEKGTLFSTNKSTKVINVNDDVSDQMPTKRVRVSVRAKCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDMSILITTYEGTHNHPLQVTASAMAYTTSAAASMMLSGSSTSSSSHHQNLHHQNSTSFGNSPALLNNCLNFNHHQFEQSRTPKQHFFIPPNHSSHNNLFPTITLDLTSPSSLSSSSSSSSNIAPVPRFSPNNLNFCSAQQPNFTPSSTIWNNNKLGLGFINNNTIMPMEKTQIRPFNHFQENFYQKCVTNYQTPSRQALAETISKAISTDPSLHSVIAAAVTSIVGQGSNNGVNQKETKENGLGLGLNLKHGEYPQLGSNNLLNQNGKGCLKGASYFKRLSPTTSSQAKNFMLLQPSLPFSVSKSSASKSSSIVNHVNHCDSKMNTHH 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00226 585 Gene3D WRKY domain 199 274 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g00226 585 MobiDBLite consensus disorder prediction 1 36 - -
Vivi6g00226 585 MobiDBLite consensus disorder prediction 12 36 - -
Vivi6g00226 585 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 19 494 IPR044810 GO:0003700
Vivi6g00226 585 MobiDBLite consensus disorder prediction 294 313 - -
Vivi6g00226 585 ProSiteProfiles WRKY domain profile. 209 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g00226 585 FunFam probable WRKY transcription factor 31 199 276 - -
Vivi6g00226 585 Coils Coil 43 70 - -
Vivi6g00226 585 Pfam WRKY DNA -binding domain 215 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g00226 585 SMART WRKY_cls 214 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g00226 585 SUPERFAMILY WRKY DNA-binding domain 208 274 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g00226 585 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00226 Vivi-Chr6 5282223 5284942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00226 43 527 WRKY Transcription Factor Family AT5G15130 41.120 1.89e-77 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi6g00226 WRKY 4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00226 - - psat:127130037 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g00226 6 5282223 5284942 Vivi6g00226 6 5282223 5284942 ECH
Vivi6g00226 6 5282223 5284942 Vivi1g02006 1 42375774 42379285 ECH